Variant report

Variant	rs34954743
Chromosome Location	chr9:17799517-17799518
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13301883	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35187055	0.87[EUR][1000 genomes]
rs35926114	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3808663	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61646773	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71504872	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71504873	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71504874	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7860719	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9406731	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9406732	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9406733	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9406737	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9407877	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9407878	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9407879	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9407880	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9407881	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9407882	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9407883	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1034673	chr9:17739006-17916606	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1023089	chr9:17748811-17919574	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17787000-17800400	Weak transcription	Fetal Brain Female	brain
2	chr9:17788600-17805400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:17796000-17812000	Weak transcription	Aorta	Aorta
4	chr9:17799000-17800600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:17799200-17800000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:17799400-17799600	Enhancers	Fetal Brain Male	brain
7	chr9:17799400-17799800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:17799400-17799800	Enhancers	Hela-S3	cervix
9	chr9:17799400-17800600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:17799400-17800600	Enhancers	Fetal Heart	heart

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