Variant report
| Variant | rs34960742 |
|---|---|
| Chromosome Location | chr3:25224306-25224307 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:25224245..25226447-chr3:25227786..25229605,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs13061437 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13068891 | 0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs13087919 | 0.89[EUR][1000 genomes] |
| rs13088163 | 0.85[EUR][1000 genomes] |
| rs17578259 | 0.89[EUR][1000 genomes] |
| rs34112261 | 0.95[ASN][1000 genomes] |
| rs34283888 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs35045659 | 0.81[EUR][1000 genomes] |
| rs35383710 | 0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs66692109 | 0.85[EUR][1000 genomes] |
| rs67093028 | 0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71311526 | 0.95[ASN][1000 genomes] |
| rs71622827 | 0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs73050342 | 0.81[ASN][1000 genomes] |
| rs9830836 | 0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv876631 | chr3:25185448-25231571 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv949035 | chr3:25194301-26084890 | Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 68 gene(s) | inside rSNPs | diseases |
| 3 | nsv508213 | chr3:25206150-25326196 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:25224200-25225200 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
