Variant report

Variant	rs34970488
Chromosome Location	chr7:137707622-137707623
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10954596	0.89[EUR][1000 genomes]
rs10954597	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11769891	0.88[EUR][1000 genomes]
rs11972734	0.87[EUR][1000 genomes]
rs11977965	0.81[AMR][1000 genomes]
rs13232124	0.88[EUR][1000 genomes]
rs13240736	0.83[AMR][1000 genomes]
rs1424376	0.85[EUR][1000 genomes]
rs2113439	0.81[AMR][1000 genomes]
rs34394140	0.83[EUR][1000 genomes]
rs34469503	0.89[EUR][1000 genomes]
rs35508415	0.85[EUR][1000 genomes]
rs35556241	0.89[EUR][1000 genomes]
rs56083840	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6969540	0.83[AMR][1000 genomes]
rs713471	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137699800-137708800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:137700600-137708800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:137700800-137709600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:137707400-137708600	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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