Variant report

Variant	rs35010696
Chromosome Location	chr14:56584566-56584567
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr14:56584559-56584856	H1-hESC	embryonic stem cell:	n/a	n/a
2	E2F6	chr14:56584317-56584919	H1-hESC	embryonic stem cell:	n/a	n/a
3	TCF7L2	chr14:56584461-56584700	Hela-S3	cervix:	n/a	n/a
4	CTCF	chr14:56584420-56584570	HA-sp	spinal cord:	n/a	n/a
5	FOXA1	chr14:56584563-56585082	HepG2	liver:	n/a	n/a
6	FOXA2	chr14:56584492-56585193	A549	lung:	n/a	n/a
7	MAX	chr14:56584542-56584822	A549	lung:	n/a	n/a
8	MAZ	chr14:56584116-56586945	IMR90	lung:	n/a	chr14:56585049-56585059 chr14:56584397-56584407 chr14:56585757-56585767
9	SP1	chr14:56584411-56585033	A549	lung:	n/a	n/a
10	MAX	chr14:56584358-56585450	A549	lung:	n/a	chr14:56585049-56585059 chr14:56584397-56584407
11	BACH1	chr14:56584490-56585294	H1-hESC	embryonic stem cell:	n/a	n/a
12	SIN3A	chr14:56584262-56585701	H1-hESC	embryonic stem cell:	n/a	chr14:56585591-56585604
13	CTCF	chr14:56584480-56584630	GM12867	blood:	n/a	n/a
14	MAX	chr14:56584471-56585258	NB4	blood:	n/a	chr14:56585049-56585059
15	POLR2A	chr14:56584521-56585368	H1-hESC	embryonic stem cell:	n/a	n/a
16	CTCF	chr14:56584440-56584590	SAEC	small airway:	n/a	n/a
17	MAX	chr14:56584489-56584866	H1-hESC	embryonic stem cell:	n/a	n/a
18	POLR2A	chr14:56584487-56585339	Hela-S3	cervix:	n/a	n/a
19	TCF12	chr14:56584196-56584954	A549	lung:	n/a	chr14:56584854-56584863
20	CTCF	chr14:56584564-56584664	A549	lung:	n/a	n/a
21	UBTF	chr14:56584503-56585534	K562	blood:	n/a	n/a
22	SMARCB1	chr14:56584322-56586220	Hela-S3	cervix:	n/a	n/a
23	CTCF	chr14:56584480-56584630	AG04449	skin:	n/a	n/a
24	RCOR1	chr14:56584536-56585191	Hela-S3	cervix:	n/a	n/a
25	FOXA2	chr14:56584435-56585403	A549	lung:	n/a	n/a
26	SPI1	chr14:56584513-56584938	HL-60	blood:	n/a	chr14:56584650-56584657 chr14:56584647-56584660
27	RAD21	chr14:56584331-56584813	H1-hESC	embryonic stem cell:	n/a	chr14:56584507-56584521
28	MXI1	chr14:56584118-56587663	IMR90	lung:	n/a	n/a
29	CREB1	chr14:56584394-56585341	A549	lung:	n/a	n/a
30	MAX	chr14:56584483-56584910	K562	blood:	n/a	n/a
31	TBP	chr14:56584386-56585340	H1-hESC	embryonic stem cell:	n/a	chr14:56584820-56584831
32	CTCF	chr14:56584520-56584670	BJ	skin:	n/a	n/a
33	MAX	chr14:56584283-56584943	MCF-7	breast:	n/a	chr14:56584397-56584407
34	MAZ	chr14:56584463-56585652	Hela-S3	cervix:	n/a	chr14:56585049-56585059
35	RCOR1	chr14:56584452-56585252	K562	blood:	n/a	n/a
36	MAX	chr14:56584499-56585399	ECC-1	luminal epithelium:	n/a	chr14:56585049-56585059
37	MAZ	chr14:56584369-56585754	K562	blood:	n/a	chr14:56585049-56585059 chr14:56584397-56584407
38	CTCF	chr14:56584380-56584630	AG09319	gingival:	n/a	n/a
39	POLR2A	chr14:56584545-56584737	Hela-S3	cervix:	n/a	n/a
40	GTF2F1	chr14:56584533-56584786	Hela-S3	cervix:	n/a	n/a
41	CTBP2	chr14:56584489-56586565	H1-hESC	embryonic stem cell:	n/a	n/a
42	REST	chr14:56584216-56586831	H1-neurons	neurons:	n/a	chr14:56585213-56585231 chr14:56586193-56586206 chr14:56585663-56585672
43	MAX	chr14:56584327-56584947	H1-hESC	embryonic stem cell:	n/a	chr14:56584397-56584407
44	MAX	chr14:56584372-56585346	A549	lung:	n/a	chr14:56585049-56585059 chr14:56584397-56584407
45	RFX5	chr14:56584545-56584965	Hela-S3	cervix:	n/a	n/a
46	E2F6	chr14:56584432-56585039	A549	lung:	n/a	n/a
47	RAD21	chr14:56584391-56586415	H1-hESC	embryonic stem cell:	n/a	chr14:56584507-56584521
48	CTCF	chr14:56584520-56584670	WERI-Rb-1	eye:	n/a	n/a
49	POLR2A	chr14:56584543-56584760	MCF-7	breast:	n/a	n/a
50	SMC3	chr14:56584456-56585245	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56582513..56585426-chr14:56585434..56588675,3	K562	blood:

Variant related genes	Relation type
PELI2	TF binding region
ENSG00000139946	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3401883	chr14:56584049-56586947	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3343418	chr14:56584224-56586772	Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56582200-56584600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr14:56582600-56584600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr14:56583000-56584800	Flanking Active TSS	Primary B cells from cord blood	blood
4	chr14:56583200-56584800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:56583400-56587600	Active TSS	Ovary	ovary
6	chr14:56583800-56584600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
7	chr14:56583800-56584800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:56583800-56587400	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr14:56584000-56584600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr14:56584000-56584600	Flanking Active TSS	Primary B cells from peripheral blood	blood
11	chr14:56584000-56584600	Flanking Active TSS	Fetal Brain Female	brain
12	chr14:56584000-56584800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr14:56584000-56584800	Flanking Active TSS	Primary hematopoietic stem cells	blood
14	chr14:56584000-56584800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr14:56584000-56584800	Flanking Active TSS	Duodenum Mucosa	Duodenum
16	chr14:56584000-56586200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr14:56584000-56586400	Active TSS	A549	lung
18	chr14:56584000-56586600	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr14:56584000-56586800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:56584000-56587000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr14:56584000-56587200	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr14:56584000-56587200	Active TSS	Stomach Smooth Muscle	stomach
23	chr14:56584000-56587400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr14:56584000-56587400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr14:56584000-56587600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr14:56584200-56584600	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr14:56584200-56584600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
28	chr14:56584200-56584600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
29	chr14:56584200-56584600	Flanking Active TSS	Primary T cells from cord blood	blood
30	chr14:56584200-56584600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
31	chr14:56584200-56584600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
32	chr14:56584200-56584600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
33	chr14:56584200-56584600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr14:56584200-56584600	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr14:56584200-56584600	Flanking Active TSS	Brain Hippocampus Middle	brain
36	chr14:56584200-56584600	Flanking Active TSS	Brain Substantia Nigra	brain
37	chr14:56584200-56584600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
38	chr14:56584200-56584600	Bivalent Enhancer	Fetal Heart	heart
39	chr14:56584200-56584600	Flanking Active TSS	Fetal Lung	lung
40	chr14:56584200-56584600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
41	chr14:56584200-56584600	Flanking Active TSS	Rectal Smooth Muscle	rectum
42	chr14:56584200-56584600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr14:56584200-56584600	Flanking Active TSS	Stomach Mucosa	stomach
44	chr14:56584200-56584600	Flanking Active TSS	Hela-S3	cervix
45	chr14:56584200-56584600	Bivalent/Poised TSS	HSMMtube	muscle
46	chr14:56584200-56584800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
47	chr14:56584200-56584800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
48	chr14:56584200-56584800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
49	chr14:56584200-56584800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr14:56584200-56584800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links