Variant report

Variant	rs35011155
Chromosome Location	chr16:81057665-81057666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr16:81057216-81058064	HepG2	liver:	n/a	n/a
2	POLR2A	chr16:81057570-81058024	GM12892	blood:	n/a	n/a
3	POLR2A	chr16:81057602-81057881	K562	blood:	n/a	n/a
4	POLR2A	chr16:81057650-81059268	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr16:81057595-81057834	GM12891	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:81055761..81058462-chr16:81067542..81069697,2	K562	blood:
2	chr16:81039002..81041272-chr16:81057250..81059847,2	MCF-7	breast:
3	chr16:81053514..81055829-chr16:81056887..81058574,2	MCF-7	breast:
4	chr16:81037094..81043910-chr16:81050858..81058489,11	MCF-7	breast:
5	chr16:81054446..81058037-chr16:81066516..81068816,3	MCF-7	breast:
6	chr16:81056962..81059865-chr16:81068197..81070898,3	K562	blood:
7	chr16:81056423..81058180-chr16:81069392..81072113,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C16orf61-1	chr16:81057660-81058210	ENSG00000260213.1

No data

Variant related genes	Relation type
CMC2	TF binding region
ENSG00000166454	Chromatin interaction
ENSG00000166451	Chromatin interaction
ENSG00000103121	Chromatin interaction
ENSG00000260213	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs12918103	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12919463	1.00[EUR][1000 genomes]
rs12919980	1.00[EUR][1000 genomes]
rs12920066	1.00[EUR][1000 genomes]
rs12921900	1.00[EUR][1000 genomes]
rs12921990	1.00[EUR][1000 genomes]
rs12922449	1.00[EUR][1000 genomes]
rs12924576	0.81[ASN][1000 genomes]
rs12924715	1.00[EUR][1000 genomes]
rs12924719	1.00[EUR][1000 genomes]
rs12928381	1.00[EUR][1000 genomes]
rs12928648	1.00[EUR][1000 genomes]
rs12928790	1.00[EUR][1000 genomes]
rs12929250	1.00[EUR][1000 genomes]
rs12930046	1.00[EUR][1000 genomes]
rs12930202	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12931555	1.00[EUR][1000 genomes]
rs12931678	1.00[EUR][1000 genomes]
rs12931766	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12931852	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12932119	1.00[EUR][1000 genomes]
rs12932272	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12932466	1.00[EUR][1000 genomes]
rs12933920	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13329702	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13333603	1.00[EUR][1000 genomes]
rs13336113	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2241408	1.00[EUR][1000 genomes]
rs2278021	1.00[EUR][1000 genomes]
rs2303214	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2549893	1.00[EUR][1000 genomes]
rs34075739	1.00[EUR][1000 genomes]
rs34082687	1.00[EUR][1000 genomes]
rs34105513	1.00[EUR][1000 genomes]
rs34262209	1.00[EUR][1000 genomes]
rs34270219	1.00[EUR][1000 genomes]
rs34277507	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34529307	1.00[EUR][1000 genomes]
rs34545373	1.00[EUR][1000 genomes]
rs34586837	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34638844	1.00[EUR][1000 genomes]
rs34699659	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34966856	1.00[EUR][1000 genomes]
rs34984547	0.84[ASN][1000 genomes]
rs34992819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35035454	0.87[EUR][1000 genomes]
rs35110550	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35117857	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35161190	1.00[EUR][1000 genomes]
rs35282277	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35292442	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35552248	1.00[EUR][1000 genomes]
rs35674322	1.00[EUR][1000 genomes]
rs35887664	1.00[EUR][1000 genomes]
rs35890164	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35899445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36040615	1.00[EUR][1000 genomes]
rs36052656	1.00[EUR][1000 genomes]
rs36056886	1.00[EUR][1000 genomes]
rs36099793	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3759931	1.00[EUR][1000 genomes]
rs57203494	1.00[EUR][1000 genomes]
rs71400131	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71400134	1.00[EUR][1000 genomes]
rs71400135	1.00[EUR][1000 genomes]
rs71400136	1.00[EUR][1000 genomes]
rs71400137	1.00[EUR][1000 genomes]
rs71400138	1.00[EUR][1000 genomes]
rs71400140	1.00[EUR][1000 genomes]
rs71400141	1.00[EUR][1000 genomes]
rs71400142	1.00[EUR][1000 genomes]
rs7200400	0.89[EUR][1000 genomes]
rs7202356	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73582605	0.87[EUR][1000 genomes]
rs754428	0.89[EUR][1000 genomes]
rs804893	1.00[EUR][1000 genomes]
rs8049650	0.87[EUR][1000 genomes]
rs8062810	1.00[EUR][1000 genomes]
rs8177862	1.00[EUR][1000 genomes]
rs8177863	1.00[EUR][1000 genomes]
rs8177878	1.00[EUR][1000 genomes]
rs8177891	1.00[EUR][1000 genomes]
rs8177919	1.00[EUR][1000 genomes]
rs8177938	1.00[EUR][1000 genomes]
rs9922227	1.00[EUR][1000 genomes]
rs9930427	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948534	chr16:80867635-81160492	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1065258	chr16:80887483-81081768	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv1064164	chr16:80918138-81126967	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv542991	chr16:80918138-81126967	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
6	nsv532597	chr16:81009718-81388348	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	nsv573338	chr16:81020393-81106944	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
8	nsv427984	chr16:81026691-81320341	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	nsv995083	chr16:81050917-81076406	Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	nsv1062724	chr16:81052312-81137007	Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	nsv522168	chr16:81054297-81061827	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81041800-81069000	Weak transcription	Ovary	ovary
2	chr16:81041800-81069000	Weak transcription	Small Intestine	intestine
3	chr16:81042000-81058400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr16:81042000-81069000	Weak transcription	Esophagus	oesophagus
5	chr16:81042000-81069000	Weak transcription	Pancreas	Pancrea
6	chr16:81042000-81069600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr16:81042200-81058600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr16:81042200-81068800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr16:81042200-81069000	Weak transcription	Colonic Mucosa	Colon
10	chr16:81042200-81069600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr16:81042400-81069000	Weak transcription	Brain Germinal Matrix	brain
12	chr16:81042400-81069000	Weak transcription	Fetal Heart	heart
13	chr16:81042600-81064200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr16:81043000-81059200	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr16:81043000-81063800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr16:81043000-81064600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr16:81043000-81065400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr16:81043200-81062800	Strong transcription	K562	blood
19	chr16:81043200-81065200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr16:81043400-81058800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr16:81044000-81064400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr16:81044000-81065200	Strong transcription	Thymus	Thymus
23	chr16:81044400-81058800	Strong transcription	Fetal Muscle Trunk	muscle
24	chr16:81044400-81059200	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr16:81044400-81064000	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr16:81044600-81058400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr16:81044600-81064000	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr16:81044800-81058800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr16:81044800-81059000	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr16:81044800-81065200	Strong transcription	Hela-S3	cervix
31	chr16:81045000-81058200	Strong transcription	HUVEC	blood vessel
32	chr16:81045000-81058800	Strong transcription	Fetal Thymus	thymus
33	chr16:81045000-81064000	Strong transcription	Dnd41	blood
34	chr16:81045200-81062800	Strong transcription	Osteobl	bone
35	chr16:81045200-81065200	Strong transcription	A549	lung
36	chr16:81045400-81065200	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr16:81045600-81058800	Strong transcription	Liver	Liver
38	chr16:81045600-81059000	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr16:81045600-81059200	Strong transcription	H9 Cell Line	embryonic stem cell
40	chr16:81046200-81058200	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr16:81046400-81064600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr16:81046600-81059000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr16:81046600-81059200	Strong transcription	HMEC	breast
44	chr16:81046800-81058200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr16:81047600-81059200	Strong transcription	NH-A	brain
46	chr16:81047800-81069000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr16:81048400-81069000	Weak transcription	Fetal Kidney	kidney
48	chr16:81048600-81069000	Weak transcription	Fetal Brain Female	brain
49	chr16:81049000-81069000	Weak transcription	Right Ventricle	heart
50	chr16:81050200-81069000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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