Variant report

Variant	rs35013996
Chromosome Location	chr8:9947145-9947146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11249975	1.00[ASN][1000 genomes]
rs11774276	1.00[ASN][1000 genomes]
rs11776035	1.00[ASN][1000 genomes]
rs11780122	1.00[ASN][1000 genomes]
rs11783705	1.00[ASN][1000 genomes]
rs11786541	1.00[ASN][1000 genomes]
rs12678938	1.00[ASN][1000 genomes]
rs13250399	1.00[ASN][1000 genomes]
rs13252276	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13272731	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13275453	1.00[ASN][1000 genomes]
rs13276420	1.00[ASN][1000 genomes]
rs13279701	0.83[AMR][1000 genomes]
rs13282752	1.00[ASN][1000 genomes]
rs1521198	1.00[ASN][1000 genomes]
rs17150816	1.00[ASN][1000 genomes]
rs1976071	1.00[ASN][1000 genomes]
rs34376851	1.00[ASN][1000 genomes]
rs35114037	1.00[ASN][1000 genomes]
rs35437983	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4526366	1.00[ASN][1000 genomes]
rs4840467	1.00[ASN][1000 genomes]
rs56279061	1.00[ASN][1000 genomes]
rs56408109	1.00[ASN][1000 genomes]
rs6601404	1.00[ASN][1000 genomes]
rs66536005	1.00[ASN][1000 genomes]
rs73189192	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73189202	1.00[ASN][1000 genomes]
rs7831285	1.00[ASN][1000 genomes]
rs7840347	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9914800-9947200	Weak transcription	Left Ventricle	heart
2	chr8:9929600-9947200	Weak transcription	Aorta	Aorta
3	chr8:9940000-9949400	Weak transcription	Spleen	Spleen
4	chr8:9940200-9948600	Weak transcription	Primary T cells from cord blood	blood
5	chr8:9941600-9947200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:9942000-9947200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:9944200-9947800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr8:9945200-9947200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:9945200-9947200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:9945200-9947200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:9945200-9947800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:9945200-9950000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr8:9945800-9947200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr8:9946200-9947200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr8:9946800-9947200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:9946800-9948200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr8:9947000-9947800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:9947000-9948000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:9947000-9948000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr8:9947000-9948000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr8:9947000-9948200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:9947000-9948200	Enhancers	NH-A	brain
23	chr8:9947000-9948200	Enhancers	NHEK	skin
24	chr8:9947000-9948400	Enhancers	HMEC	breast

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