Variant report

Variant	rs35015161
Chromosome Location	chr1:92667661-92667662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr1:92667612-92667824	HepG2	liver:	n/a	chr1:92667680-92667691
2	CEBPB	chr1:92667543-92667832	K562	blood:	n/a	chr1:92667680-92667691
3	CEBPB	chr1:92667660-92667731	H1-hESC	embryonic stem cell:	n/a	chr1:92667680-92667691
4	CEBPB	chr1:92667535-92667832	IMR90	lung:	n/a	chr1:92667680-92667691
5	SPI1	chr1:92667452-92667829	HL-60	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000226773	TF binding region

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10874637	0.83[ASN][1000 genomes]
rs10875237	0.81[EUR][1000 genomes]
rs11164226	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11164312	0.89[ASN][1000 genomes]
rs11577572	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11577839	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11578012	0.89[ASN][1000 genomes]
rs11578400	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11580693	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11585255	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11588044	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11588153	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11589858	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12094293	0.89[ASN][1000 genomes]
rs1226176	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1226179	0.84[EUR][1000 genomes]
rs1226183	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12401372	0.89[ASN][1000 genomes]
rs12404806	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12406749	0.86[EUR][1000 genomes]
rs12407622	0.89[ASN][1000 genomes]
rs12411162	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12724638	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12727665	0.89[ASN][1000 genomes]
rs12731923	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12735898	0.89[ASN][1000 genomes]
rs12740246	0.81[EUR][1000 genomes]
rs12749317	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12753920	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12755781	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12757533	0.89[ASN][1000 genomes]
rs12759512	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384613	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17519385	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17578686	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1809606	0.89[ASN][1000 genomes]
rs1872007	0.90[ASN][1000 genomes]
rs2004814	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2069051	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2181897	0.85[EUR][1000 genomes]
rs2391158	0.89[ASN][1000 genomes]
rs2391162	0.89[ASN][1000 genomes]
rs34090353	0.89[ASN][1000 genomes]
rs35580949	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4658294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4658297	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4658298	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4658299	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs488288	0.81[EUR][1000 genomes]
rs490800	0.81[EUR][1000 genomes]
rs492164	0.84[EUR][1000 genomes]
rs4949888	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4970699	0.89[ASN][1000 genomes]
rs4970713	0.89[ASN][1000 genomes]
rs504606	0.83[EUR][1000 genomes]
rs504613	0.83[EUR][1000 genomes]
rs506375	0.84[EUR][1000 genomes]
rs506377	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs511546	0.84[EUR][1000 genomes]
rs515280	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs519343	0.81[EUR][1000 genomes]
rs519623	0.82[EUR][1000 genomes]
rs519932	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs539288	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs544557	0.86[EUR][1000 genomes]
rs556980	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs560389	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs563113	0.84[EUR][1000 genomes]
rs564971	0.84[EUR][1000 genomes]
rs569593	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs570368	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs573044	0.84[EUR][1000 genomes]
rs575805	0.84[EUR][1000 genomes]
rs6603973	0.83[ASN][1000 genomes]
rs6662379	0.89[ASN][1000 genomes]
rs6663905	0.89[ASN][1000 genomes]
rs66758257	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72720457	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7511656	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7511669	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7522081	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7524120	0.89[ASN][1000 genomes]
rs7537221	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7545076	0.83[EUR][1000 genomes]
rs7550680	0.89[ASN][1000 genomes]
rs9439911	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012864	chr1:92067100-92827761	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv535029	chr1:92067100-92827761	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv530438	chr1:92091957-92827760	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv530046	chr1:92277460-92799794	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv871508	chr1:92478130-92781579	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92666800-92668400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:92666800-92669200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr1:92667200-92668200	Enhancers	Dnd41	blood
4	chr1:92667400-92667800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr1:92667400-92667800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:92667400-92668000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr1:92667400-92668200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr1:92667400-92668200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr1:92667400-92668400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr1:92667400-92668800	Enhancers	Primary T cells from cord blood	blood
11	chr1:92667400-92668800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr1:92667600-92667800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr1:92667600-92668000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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