Variant report

Variant	rs35018118
Chromosome Location	chr15:77291197-77291198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77282963..77284982-chr15:77290568..77292460,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17380886	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2458245	0.87[EUR][1000 genomes]
rs2458247	0.83[EUR][1000 genomes]
rs2469229	0.88[EUR][1000 genomes]
rs34220530	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34370173	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34500166	0.81[EUR][1000 genomes]
rs4886508	0.81[EUR][1000 genomes]
rs56131741	0.83[ASN][1000 genomes]
rs869884	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv833058	chr15:77235895-77393640	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv517068	chr15:77254544-77381222	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	esv1808532	chr15:77257714-77332539	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1043017	chr15:77266776-77309938	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1035874	chr15:77266776-77328742	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv1822592	chr15:77283956-77332539	Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv570111	chr15:77286693-77332606	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77288200-77293600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:77289200-77311200	Weak transcription	Aorta	Aorta
3	chr15:77289400-77292800	Enhancers	Fetal Thymus	thymus
4	chr15:77289400-77299000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:77289400-77302200	Weak transcription	Pancreas	Pancrea
6	chr15:77289400-77305200	Weak transcription	Esophagus	oesophagus
7	chr15:77289400-77310000	Weak transcription	Colon Smooth Muscle	Colon
8	chr15:77289600-77291200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
9	chr15:77289600-77291400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:77289600-77293400	Weak transcription	Spleen	Spleen
11	chr15:77289600-77294400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:77289600-77294400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr15:77289600-77294800	Weak transcription	HSMM	muscle
14	chr15:77289600-77295000	Weak transcription	Colonic Mucosa	Colon
15	chr15:77289600-77301600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:77289800-77294400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:77289800-77294400	Weak transcription	Thymus	Thymus
18	chr15:77289800-77294600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr15:77289800-77296200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr15:77289800-77297400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr15:77290000-77291400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr15:77290000-77292000	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr15:77290000-77294400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr15:77290200-77291400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr15:77290200-77293800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr15:77290200-77294000	Weak transcription	Primary hematopoietic stem cells	blood
27	chr15:77290200-77306000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr15:77290400-77292000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr15:77290600-77291200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
30	chr15:77290600-77291200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
31	chr15:77290600-77291400	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
32	chr15:77290600-77291600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
33	chr15:77290800-77291200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr15:77290800-77291200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
35	chr15:77290800-77291200	Enhancers	HSMMtube	muscle
36	chr15:77290800-77291400	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr15:77290800-77291400	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
38	chr15:77290800-77291800	Enhancers	Primary T cells from cord blood	blood
39	chr15:77290800-77292000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr15:77290800-77293800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:77291000-77291200	Bivalent Enhancer	Adipose Nuclei	Adipose
42	chr15:77291000-77291200	Enhancers	Brain Angular Gyrus	brain
43	chr15:77291000-77291200	Enhancers	Brain Hippocampus Middle	brain
44	chr15:77291000-77291200	Enhancers	Placenta	Placenta
45	chr15:77291000-77291200	Flanking Active TSS	GM12878-XiMat	blood
46	chr15:77291000-77291400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
47	chr15:77291000-77291400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
48	chr15:77291000-77291400	Enhancers	Fetal Muscle Trunk	muscle
49	chr15:77291000-77291600	Enhancers	Fetal Muscle Leg	muscle
50	chr15:77291000-77291600	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood

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