Variant report

Variant	rs35024744
Chromosome Location	chr3:23337538-23337539
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10510537	0.87[ASN][1000 genomes]
rs12106681	0.81[EUR][1000 genomes]
rs13059557	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13060251	0.81[EUR][1000 genomes]
rs13063183	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13063986	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13070865	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13077333	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13078970	0.81[EUR][1000 genomes]
rs13083654	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13084327	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13087234	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13087563	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13089963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13090303	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13095736	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13095960	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13098494	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13100605	0.81[EUR][1000 genomes]
rs17012823	0.86[ASN][1000 genomes]
rs17012897	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17012927	0.87[ASN][1000 genomes]
rs17012943	0.87[ASN][1000 genomes]
rs17012959	0.88[ASN][1000 genomes]
rs17012969	0.88[ASN][1000 genomes]
rs17012988	0.88[ASN][1000 genomes]
rs17012998	0.87[ASN][1000 genomes]
rs17013023	0.85[ASN][1000 genomes]
rs17013026	0.85[ASN][1000 genomes]
rs17013029	0.83[ASN][1000 genomes]
rs17013035	0.85[ASN][1000 genomes]
rs17013049	0.85[ASN][1000 genomes]
rs17013241	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17345745	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17404982	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34108997	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34239585	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34259979	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34584255	0.81[EUR][1000 genomes]
rs34646795	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34896901	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34928302	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34972244	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35038414	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35059447	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35096750	0.81[EUR][1000 genomes]
rs35098118	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35236373	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35240920	0.81[EUR][1000 genomes]
rs35320722	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35346188	0.81[EUR][1000 genomes]
rs35587590	0.81[EUR][1000 genomes]
rs35743404	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35776486	0.81[EUR][1000 genomes]
rs36004369	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36123653	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36123979	0.81[EUR][1000 genomes]
rs58844120	1.00[ASN][1000 genomes]
rs61707213	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71317827	0.81[EUR][1000 genomes]
rs71317829	0.81[EUR][1000 genomes]
rs71322175	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71322180	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71322181	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71322182	0.81[EUR][1000 genomes]
rs71322186	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71322188	0.87[EUR][1000 genomes]
rs9857217	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9873329	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004417	chr3:23318797-23389422	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv967177	chr3:23337450-23350050	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23336600-23337600	Enhancers	Primary B cells from cord blood	blood
2	chr3:23336600-23337600	Enhancers	Primary B cells from peripheral blood	blood
3	chr3:23337000-23337600	Enhancers	GM12878-XiMat	blood
4	chr3:23337400-23343000	Weak transcription	Psoas Muscle	Psoas

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