Variant report

Variant	rs35027032
Chromosome Location	chr8:10818524-10818525
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10813776..10816525-chr8:10817526..10819399,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10087923	0.83[ASN][1000 genomes]
rs10093514	0.83[EUR][1000 genomes]
rs11250098	0.82[ASN][1000 genomes]
rs11250099	0.82[ASN][1000 genomes]
rs28494533	0.85[EUR][1000 genomes]
rs34959618	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3885690	0.87[EUR][1000 genomes]
rs55982337	0.88[ASN][1000 genomes]
rs61581529	0.94[ASN][1000 genomes]
rs6601541	0.84[EUR][1000 genomes]
rs6983869	0.84[EUR][1000 genomes]
rs7013277	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73196860	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv521721	chr8:10802102-10836472	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35027032	C8orf5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10815000-10820800	Enhancers	Fetal Muscle Leg	muscle
2	chr8:10815400-10818600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr8:10817600-10819400	Enhancers	Fetal Brain Male	brain
4	chr8:10817600-10820000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:10817800-10818800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:10817800-10819400	Enhancers	Fetal Brain Female	brain
7	chr8:10817800-10819800	Enhancers	Fetal Muscle Trunk	muscle
8	chr8:10817800-10820000	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr8:10817800-10820000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr8:10818000-10819000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:10818000-10820000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr8:10818200-10818600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr8:10818200-10819000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr8:10818200-10819000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:10818200-10819000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr8:10818200-10819400	Enhancers	Brain Angular Gyrus	brain
17	chr8:10818200-10819600	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr8:10818200-10819800	Enhancers	Brain Germinal Matrix	brain
19	chr8:10818200-10820000	Enhancers	Primary T cells fromperipheralblood	blood
20	chr8:10818200-10820000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr8:10818200-10820000	Enhancers	Brain Anterior Caudate	brain
22	chr8:10818200-10820200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr8:10818400-10819000	Enhancers	H1 Cell Line	embryonic stem cell
24	chr8:10818400-10819400	Enhancers	Brain Hippocampus Middle	brain
25	chr8:10818400-10819800	Enhancers	Brain Cingulate Gyrus	brain
26	chr8:10818400-10820000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr8:10818400-10822200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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