Variant report

Variant	rs35067106
Chromosome Location	chr4:48105221-48105222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:47914195..47916266-chr4:48104648..48107155,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163293	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10007288	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13118073	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13123671	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13138066	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13148174	0.83[ASN][1000 genomes]
rs1466998	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1567218	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17674224	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34059656	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35201668	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35494193	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35590286	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792624	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4589663	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55718430	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60251898	0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs67723804	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6825925	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6844940	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6850108	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73244480	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7654844	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7679010	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48088600-48106000	Weak transcription	Fetal Thymus	thymus
2	chr4:48088600-48107800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr4:48097200-48105400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:48097800-48111800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:48098200-48105400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr4:48098600-48106000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:48103400-48114000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr4:48104000-48106200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr4:48104000-48106200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:48104200-48105600	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr4:48104400-48106000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr4:48104400-48106200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr4:48104400-48108000	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr4:48104400-48114000	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr4:48104600-48106000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr4:48105000-48106000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:48105000-48106200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr4:48105000-48106400	Strong transcription	Primary T cells from cord blood	blood
19	chr4:48105200-48106000	Strong transcription	Primary hematopoietic stem cells	blood
20	chr4:48105200-48106000	Enhancers	GM12878-XiMat	blood
21	chr4:48105200-48106200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
22	chr4:48105200-48106200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--

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