Variant report

Variant	rs35088798
Chromosome Location	chr2:21117313-21117314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10188503	1.00[ASN][1000 genomes]
rs11673955	1.00[ASN][1000 genomes]
rs11673961	1.00[ASN][1000 genomes]
rs11692595	1.00[ASN][1000 genomes]
rs11902301	1.00[ASN][1000 genomes]
rs12710746	1.00[ASN][1000 genomes]
rs12992919	1.00[ASN][1000 genomes]
rs12995733	1.00[ASN][1000 genomes]
rs12998321	1.00[ASN][1000 genomes]
rs12999597	1.00[ASN][1000 genomes]
rs13009577	1.00[ASN][1000 genomes]
rs13010638	1.00[ASN][1000 genomes]
rs13018819	1.00[ASN][1000 genomes]
rs13410454	1.00[ASN][1000 genomes]
rs28545158	1.00[ASN][1000 genomes]
rs34504815	1.00[ASN][1000 genomes]
rs34645675	1.00[ASN][1000 genomes]
rs36143367	1.00[ASN][1000 genomes]
rs3923672	1.00[ASN][1000 genomes]
rs4362515	1.00[ASN][1000 genomes]
rs6713732	1.00[ASN][1000 genomes]
rs6715637	1.00[ASN][1000 genomes]
rs6731768	1.00[ASN][1000 genomes]
rs6741714	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455841	chr2:21086693-21135577	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv581168	chr2:21086693-21135577	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21114200-21127800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:21115200-21120000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:21115400-21117800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:21115400-21118000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:21115400-21119800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:21115400-21120200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:21116200-21118600	Enhancers	NHLF	lung
8	chr2:21116200-21118800	Enhancers	NHEK	skin
9	chr2:21116400-21117600	Enhancers	Colon Smooth Muscle	Colon
10	chr2:21116400-21118400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:21116400-21118600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr2:21116400-21118600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr2:21116400-21119800	Enhancers	Fetal Thymus	thymus
14	chr2:21116600-21117400	Enhancers	Pancreas	Pancrea
15	chr2:21116600-21118000	Enhancers	Fetal Muscle Leg	muscle
16	chr2:21116600-21118400	Enhancers	HMEC	breast
17	chr2:21116600-21118800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:21116600-21118800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr2:21116800-21117400	Enhancers	Brain Cingulate Gyrus	brain
20	chr2:21116800-21117400	Enhancers	Lung	lung
21	chr2:21116800-21117400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
22	chr2:21116800-21117400	Enhancers	HSMMtube	muscle
23	chr2:21116800-21117400	Enhancers	NH-A	brain
24	chr2:21116800-21117600	Enhancers	Aorta	Aorta
25	chr2:21116800-21117600	Enhancers	Fetal Lung	lung
26	chr2:21116800-21118800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr2:21117000-21117400	Enhancers	Fetal Brain Male	brain
28	chr2:21117000-21117600	Enhancers	Brain Hippocampus Middle	brain
29	chr2:21117000-21117600	Enhancers	HSMM	muscle
30	chr2:21117000-21117600	Flanking Active TSS	Osteobl	bone
31	chr2:21117200-21117400	Flanking Active TSS	Stomach Smooth Muscle	stomach

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