Variant report

Variant	rs35092233
Chromosome Location	chr1:85845821-85845822
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:85839536..85841245-chr1:85843364..85846261,2	K562	blood:
2	chr1:85843890..85846384-chr1:85930341..85931976,2	MCF-7	breast:
3	chr1:85839315..85841036-chr1:85844742..85846261,2	K562	blood:

Variant related genes	Relation type
ENSG00000153904	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10493764	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12402128	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1523993	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17387935	0.95[ASN][1000 genomes]
rs17590006	0.88[ASN][1000 genomes]
rs35294786	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35876501	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35956189	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36062892	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3768226	0.88[ASN][1000 genomes]
rs4475804	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61769484	0.81[ASN][1000 genomes]
rs61769490	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61783046	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6659486	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6669293	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6673833	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7540393	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv34165	chr1:85542040-85846249	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv830470	chr1:85820775-86014080	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1008877	chr1:85843238-85897570	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85839400-85846400	Weak transcription	Small Intestine	intestine
2	chr1:85839800-85864200	Weak transcription	Aorta	Aorta
3	chr1:85840400-85848000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:85841200-85851400	Weak transcription	Pancreas	Pancrea
5	chr1:85841200-85859800	Weak transcription	NH-A	brain
6	chr1:85841800-85848000	Weak transcription	NHDF-Ad	bronchial
7	chr1:85842000-85850800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:85842400-85847200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:85842600-85846000	Weak transcription	Colon Smooth Muscle	Colon
10	chr1:85842600-85847800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:85842800-85847200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr1:85842800-85847600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:85844800-85846200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:85844800-85846200	Enhancers	Liver	Liver
15	chr1:85844800-85846200	Enhancers	Brain Anterior Caudate	brain
16	chr1:85844800-85846200	Enhancers	Fetal Stomach	stomach
17	chr1:85844800-85846200	Enhancers	Ovary	ovary
18	chr1:85845000-85848000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:85845000-85852800	Strong transcription	Osteobl	bone
20	chr1:85845000-85870000	Weak transcription	HSMMtube	muscle
21	chr1:85845200-85846000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr1:85845200-85846200	Enhancers	Fetal Lung	lung
23	chr1:85845200-85846200	Enhancers	HepG2	liver
24	chr1:85845200-85846200	Genic enhancers	HSMM	muscle
25	chr1:85845400-85846400	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr1:85845400-85847800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:85845400-85848400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr1:85845600-85846000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr1:85845600-85846200	Enhancers	Psoas Muscle	Psoas
30	chr1:85845600-85846400	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr1:85845600-85846400	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr1:85845600-85848000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:85845800-85859800	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links