Variant report

Variant	rs35094494
Chromosome Location	chr14:56122689-56122690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10444721	0.93[ASN][1000 genomes]
rs10483644	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10483649	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10483651	0.93[ASN][1000 genomes]
rs12432344	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12432588	0.87[EUR][1000 genomes]
rs12432887	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12433592	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12434609	0.92[ASN][1000 genomes]
rs12434624	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12434660	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12434799	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12435643	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12587700	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12587705	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12587735	0.93[ASN][1000 genomes]
rs12588172	0.87[ASN][1000 genomes]
rs12588185	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12589864	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12589867	0.89[EUR][1000 genomes]
rs12590388	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12590936	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12882850	0.80[ASN][1000 genomes]
rs12885864	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12888809	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12891129	0.94[ASN][1000 genomes]
rs12893162	0.93[ASN][1000 genomes]
rs12895070	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12895366	0.94[ASN][1000 genomes]
rs17128610	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17128614	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17128655	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17128657	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17128677	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17128684	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17128690	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17253737	0.94[ASN][1000 genomes]
rs17684916	0.93[ASN][1000 genomes]
rs17684959	0.87[ASN][1000 genomes]
rs17685650	0.93[ASN][1000 genomes]
rs1951887	0.92[ASN][1000 genomes]
rs1951889	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1951890	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2252189	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2274076	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2274078	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2274079	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2296183	0.93[ASN][1000 genomes]
rs2341889	0.87[EUR][1000 genomes]
rs28458791	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28581272	0.86[ASN][1000 genomes]
rs28703642	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34023572	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34111199	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34118806	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34133022	0.94[ASN][1000 genomes]
rs34184813	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34408323	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34548095	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34697059	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34706911	0.92[ASN][1000 genomes]
rs34709110	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34853759	0.94[ASN][1000 genomes]
rs34931260	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34982220	0.95[ASN][1000 genomes]
rs35047443	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35420484	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35451981	0.88[EUR][1000 genomes]
rs35531912	0.89[EUR][1000 genomes]
rs35535838	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35560341	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35790844	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55760841	0.88[EUR][1000 genomes]
rs55927221	0.95[ASN][1000 genomes]
rs56229542	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60233569	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61381603	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6573051	0.82[ASN][1000 genomes]
rs6573053	0.92[ASN][1000 genomes]
rs6573054	0.94[ASN][1000 genomes]
rs7150285	0.93[ASN][1000 genomes]
rs7156566	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7158176	0.94[ASN][1000 genomes]
rs8003149	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8006443	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8015588	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051564	chr14:55895610-56130788	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv542103	chr14:55895610-56130788	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv832804	chr14:56083850-56277632	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv1792376	chr14:56108007-56150151	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1283	chr14:56120059-56164729	Strong transcription Genic enhancers ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56078600-56148600	Weak transcription	Stomach Mucosa	stomach
2	chr14:56087400-56132200	Strong transcription	Dnd41	blood
3	chr14:56087600-56145200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:56088200-56129400	Weak transcription	Spleen	Spleen
5	chr14:56088200-56132200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:56088400-56153200	Weak transcription	Gastric	stomach
7	chr14:56092800-56135400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:56094400-56132600	Strong transcription	HSMM	muscle
9	chr14:56095000-56142200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr14:56097600-56145200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:56097600-56155400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr14:56099000-56128000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:56100200-56131000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr14:56101000-56132800	Strong transcription	Primary B cells from peripheral blood	blood
15	chr14:56101800-56123200	Weak transcription	Fetal Intestine Small	intestine
16	chr14:56101800-56128800	Weak transcription	Fetal Stomach	stomach
17	chr14:56101800-56162800	Weak transcription	Brain Germinal Matrix	brain
18	chr14:56102400-56145200	Weak transcription	Lung	lung
19	chr14:56102400-56185400	Weak transcription	Right Ventricle	heart
20	chr14:56103400-56130600	Weak transcription	Thymus	Thymus
21	chr14:56104600-56127600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr14:56104800-56128800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr14:56104800-56157400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr14:56105000-56129200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr14:56105000-56138200	Weak transcription	Psoas Muscle	Psoas
26	chr14:56106000-56150200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:56109200-56132000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr14:56109200-56141800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr14:56109200-56164000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr14:56109600-56131400	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr14:56109800-56128000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr14:56109800-56139600	Weak transcription	Colonic Mucosa	Colon
33	chr14:56109800-56145400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr14:56110800-56125000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:56111800-56127200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr14:56112800-56131200	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr14:56113200-56131400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr14:56113400-56130000	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr14:56113400-56132000	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr14:56113800-56155000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr14:56114600-56125600	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr14:56114600-56131400	Strong transcription	HUES6 Cell Line	embryonic stem cell
43	chr14:56114800-56124000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr14:56114800-56125000	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr14:56114800-56125400	Strong transcription	NH-A	brain
46	chr14:56114800-56127200	Strong transcription	Primary B cells from cord blood	blood
47	chr14:56114800-56128000	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr14:56114800-56128200	Strong transcription	Placenta	Placenta
49	chr14:56114800-56128400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr14:56114800-56131400	Strong transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links