Variant report

Variant	rs35103022
Chromosome Location	chr4:79643078-79643079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:79639723..79644751-chr4:79695809..79700449,7	K562	blood:
2	chr4:79529076..79531360-chr4:79643005..79644726,2	K562	blood:
3	chr4:79632417..79635244-chr4:79639660..79644027,4	K562	blood:
4	chr4:79642452..79644169-chr4:79648847..79652210,3	K562	blood:
5	chr4:79567313..79569878-chr4:79640886..79643342,2	K562	blood:
6	chr4:79641529..79646816-chr4:79652433..79657132,8	K562	blood:
7	chr4:79640304..79643611-chr4:79647879..79654272,6	K562	blood:
8	chr4:79641293..79643871-chr4:79697074..79700036,2	K562	blood:
9	chr4:79612194..79614576-chr4:79640303..79644240,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000138756	Chromatin interaction
ENSG00000251442	Chromatin interaction
ENSG00000260278	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3775526	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79641000-79644600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr4:79641200-79643600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:79641200-79643800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr4:79641200-79644000	Enhancers	H9 Cell Line	embryonic stem cell
5	chr4:79641200-79644000	Enhancers	Primary B cells from peripheral blood	blood
6	chr4:79641200-79644600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr4:79641400-79643800	Enhancers	Fetal Heart	heart
8	chr4:79641600-79643600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:79641800-79645600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:79642000-79643200	Weak transcription	Brain Substantia Nigra	brain
11	chr4:79642000-79643200	Enhancers	Fetal Lung	lung
12	chr4:79642000-79643200	Enhancers	Fetal Thymus	thymus
13	chr4:79642200-79643200	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr4:79642200-79643800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr4:79642200-79643800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:79642200-79644000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:79642200-79644000	Enhancers	Brain Cingulate Gyrus	brain
18	chr4:79642200-79644400	Enhancers	Liver	Liver
19	chr4:79642400-79643400	Enhancers	Fetal Intestine Large	intestine
20	chr4:79642400-79643400	Weak transcription	Left Ventricle	heart
21	chr4:79642400-79643600	Weak transcription	Fetal Muscle Leg	muscle
22	chr4:79642400-79644000	Enhancers	Fetal Intestine Small	intestine
23	chr4:79642400-79644400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr4:79642400-79644800	Weak transcription	Lung	lung
25	chr4:79642600-79643200	Enhancers	Primary T cells from cord blood	blood
26	chr4:79642600-79643200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr4:79642600-79643400	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr4:79642600-79643400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr4:79642600-79643400	Weak transcription	Right Atrium	heart
30	chr4:79642600-79643600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr4:79642600-79644000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr4:79642600-79644200	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr4:79642600-79644200	Enhancers	Primary B cells from cord blood	blood
34	chr4:79642600-79644200	Enhancers	Primary hematopoietic stem cells	blood
35	chr4:79642600-79644200	Enhancers	Brain Anterior Caudate	brain
36	chr4:79642800-79643400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
37	chr4:79642800-79643400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr4:79642800-79643400	Enhancers	HepG2	liver
39	chr4:79642800-79643800	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr4:79642800-79643800	Enhancers	Brain Germinal Matrix	brain
41	chr4:79642800-79644000	Enhancers	GM12878-XiMat	blood
42	chr4:79642800-79644000	Enhancers	HUVEC	blood vessel
43	chr4:79642800-79644000	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr4:79642800-79647800	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr4:79642800-79662000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr4:79643000-79643200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr4:79643000-79643200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr4:79643000-79643400	Weak transcription	Adipose Nuclei	Adipose
49	chr4:79643000-79644000	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr4:79643000-79644200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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