Variant report

Variant	rs35122182
Chromosome Location	chr1:93809210-93809211
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr1:93809152-93809352	K562	blood:	n/a	n/a
2	POLR2A	chr1:93808994-93809219	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:93808671..93811295-chr1:93877752..93880547,2	K562	blood:
2	chr1:93808883..93811348-chr1:94310727..94314254,3	K562	blood:
3	chr1:93809028..93811337-chr1:93912492..93915349,2	K562	blood:
4	chr1:93807407..93809426-chr1:93810981..93815349,3	MCF-7	breast:

Variant related genes	Relation type
DR1	TF binding region
ENSG00000223745	TF binding region
ENSG00000117505	Chromatin interaction
ENSG00000223745	Chromatin interaction
ENSG00000211575	Chromatin interaction
ENSG00000137942	Chromatin interaction
ENSG00000137936	Chromatin interaction
ENSG00000260464	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93765800-93809800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr1:93789200-93810200	Weak transcription	Esophagus	oesophagus
3	chr1:93790800-93810000	Weak transcription	Fetal Intestine Small	intestine
4	chr1:93794400-93810600	Weak transcription	Fetal Brain Male	brain
5	chr1:93795000-93810600	Weak transcription	Fetal Brain Female	brain
6	chr1:93797200-93810600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:93799000-93810600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:93800400-93810200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:93801400-93810600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:93801800-93810600	Weak transcription	Brain Germinal Matrix	brain
11	chr1:93802200-93810600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:93802400-93810200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr1:93802600-93811000	Weak transcription	Spleen	Spleen
14	chr1:93803400-93810600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr1:93804200-93810800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:93804600-93810000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr1:93804800-93810400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:93804800-93810400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr1:93804800-93810400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr1:93804800-93810400	Weak transcription	NHLF	lung
21	chr1:93804800-93810600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr1:93804800-93810800	Weak transcription	Aorta	Aorta
23	chr1:93804800-93810800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr1:93805000-93809800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr1:93805000-93809800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr1:93805000-93810000	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr1:93805000-93810000	Weak transcription	Fetal Lung	lung
28	chr1:93805000-93810000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr1:93805000-93810200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr1:93805000-93810200	Weak transcription	Liver	Liver
31	chr1:93805000-93810200	Weak transcription	Placenta	Placenta
32	chr1:93805000-93810400	Weak transcription	Adipose Nuclei	Adipose
33	chr1:93805000-93810400	Weak transcription	Lung	lung
34	chr1:93805000-93810400	Weak transcription	HSMMtube	muscle
35	chr1:93805000-93810600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr1:93805000-93810600	Weak transcription	Brain Angular Gyrus	brain
37	chr1:93805000-93810600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr1:93805000-93810600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr1:93805000-93810600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr1:93805000-93810600	Weak transcription	Fetal Kidney	kidney
41	chr1:93805000-93810600	Weak transcription	Fetal Stomach	stomach
42	chr1:93805000-93810600	Weak transcription	Ovary	ovary
43	chr1:93805200-93809800	Weak transcription	Primary B cells from cord blood	blood
44	chr1:93805200-93809800	Weak transcription	Fetal Intestine Large	intestine
45	chr1:93805200-93810000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr1:93805200-93810000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr1:93805200-93810000	Weak transcription	Brain Hippocampus Middle	brain
48	chr1:93805200-93810000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr1:93805200-93810000	Weak transcription	HSMM	muscle
50	chr1:93805200-93810200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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