Variant report

Variant	rs35134381
Chromosome Location	chr1:215570655-215570656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 148 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:146)

rs_ID	r²[population]
rs10127809	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10465665	0.81[AFR][1000 genomes]
rs10494998	0.92[ASN][1000 genomes]
rs10494999	0.86[ASN][1000 genomes]
rs11120554	0.86[ASN][1000 genomes]
rs11120588	0.88[ASN][1000 genomes]
rs11120591	0.88[ASN][1000 genomes]
rs12062740	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12064396	0.92[ASN][1000 genomes]
rs12066481	0.92[ASN][1000 genomes]
rs12070874	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12080428	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12084684	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12089271	0.88[ASN][1000 genomes]
rs12093830	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13374655	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13376274	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13376355	0.92[ASN][1000 genomes]
rs1395722	0.92[ASN][1000 genomes]
rs1557172	0.88[ASN][1000 genomes]
rs17024732	0.92[ASN][1000 genomes]
rs17024744	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024751	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17024755	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024758	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1819740	0.85[ASN][1000 genomes]
rs1876407	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1876408	0.92[ASN][1000 genomes]
rs2797392	0.85[ASN][1000 genomes]
rs2885989	1.00[ASN][1000 genomes]
rs3753837	0.85[ASN][1000 genomes]
rs3753838	0.85[ASN][1000 genomes]
rs3767251	0.81[ASN][1000 genomes]
rs3767252	0.81[ASN][1000 genomes]
rs3767253	0.81[ASN][1000 genomes]
rs3767256	0.85[ASN][1000 genomes]
rs3767258	0.85[ASN][1000 genomes]
rs3767259	0.85[ASN][1000 genomes]
rs3767260	0.85[ASN][1000 genomes]
rs3767262	0.85[ASN][1000 genomes]
rs3845523	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4607849	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56802573	0.92[ASN][1000 genomes]
rs56956076	0.88[ASN][1000 genomes]
rs57110734	0.85[ASN][1000 genomes]
rs57179404	0.85[ASN][1000 genomes]
rs57309511	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57311096	0.81[ASN][1000 genomes]
rs57379455	1.00[ASN][1000 genomes]
rs57397989	0.85[ASN][1000 genomes]
rs57563355	0.85[ASN][1000 genomes]
rs57628126	0.88[ASN][1000 genomes]
rs57758604	0.88[ASN][1000 genomes]
rs57861859	0.85[ASN][1000 genomes]
rs57935471	0.85[ASN][1000 genomes]
rs58102262	0.85[ASN][1000 genomes]
rs58163611	1.00[ASN][1000 genomes]
rs58257972	0.81[ASN][1000 genomes]
rs58330534	0.88[ASN][1000 genomes]
rs58342290	0.92[ASN][1000 genomes]
rs58425452	0.88[ASN][1000 genomes]
rs58542168	0.88[ASN][1000 genomes]
rs58557470	0.88[ASN][1000 genomes]
rs58594611	0.88[ASN][1000 genomes]
rs58597977	0.88[ASN][1000 genomes]
rs58629829	0.88[ASN][1000 genomes]
rs58649725	0.88[ASN][1000 genomes]
rs58682085	0.85[ASN][1000 genomes]
rs58759277	0.81[ASN][1000 genomes]
rs58836680	0.88[ASN][1000 genomes]
rs58867901	0.85[ASN][1000 genomes]
rs58919310	0.88[ASN][1000 genomes]
rs59015398	0.85[ASN][1000 genomes]
rs59026507	0.85[ASN][1000 genomes]
rs59040705	0.88[ASN][1000 genomes]
rs59233975	0.88[ASN][1000 genomes]
rs59319848	0.81[ASN][1000 genomes]
rs59628625	1.00[ASN][1000 genomes]
rs59635576	0.85[ASN][1000 genomes]
rs59636344	0.85[ASN][1000 genomes]
rs60026262	1.00[ASN][1000 genomes]
rs60365921	0.88[ASN][1000 genomes]
rs60404320	0.96[ASN][1000 genomes]
rs60533889	0.81[ASN][1000 genomes]
rs60590154	0.81[ASN][1000 genomes]
rs60597792	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60620576	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61057668	0.92[ASN][1000 genomes]
rs61059263	0.92[ASN][1000 genomes]
rs61167296	0.92[ASN][1000 genomes]
rs61362928	0.86[ASN][1000 genomes]
rs61368758	0.88[ASN][1000 genomes]
rs61400453	0.92[ASN][1000 genomes]
rs61600848	1.00[ASN][1000 genomes]
rs61618553	1.00[ASN][1000 genomes]
rs61633090	0.88[ASN][1000 genomes]
rs61685588	0.88[ASN][1000 genomes]
rs6674016	0.92[ASN][1000 genomes]
rs6678049	0.92[ASN][1000 genomes]
rs6679048	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6686570	0.92[ASN][1000 genomes]
rs6689680	0.85[ASN][1000 genomes]
rs6690170	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6700397	0.85[ASN][1000 genomes]
rs73081443	0.88[ASN][1000 genomes]
rs73081447	0.88[ASN][1000 genomes]
rs73081459	0.88[ASN][1000 genomes]
rs73081470	0.88[ASN][1000 genomes]
rs73081479	0.88[ASN][1000 genomes]
rs73081487	0.88[ASN][1000 genomes]
rs73081497	0.88[ASN][1000 genomes]
rs73083403	0.81[ASN][1000 genomes]
rs73083410	0.88[ASN][1000 genomes]
rs73083415	0.88[ASN][1000 genomes]
rs73083420	0.88[ASN][1000 genomes]
rs73083421	0.88[ASN][1000 genomes]
rs73083429	0.88[ASN][1000 genomes]
rs73083436	0.88[ASN][1000 genomes]
rs73083437	0.88[ASN][1000 genomes]
rs73083461	0.88[ASN][1000 genomes]
rs73083470	0.88[ASN][1000 genomes]
rs73083500	0.85[ASN][1000 genomes]
rs73085404	0.85[ASN][1000 genomes]
rs73085410	0.85[ASN][1000 genomes]
rs73087440	0.81[ASN][1000 genomes]
rs73090166	0.92[ASN][1000 genomes]
rs73090172	0.92[ASN][1000 genomes]
rs73090177	0.92[ASN][1000 genomes]
rs73090179	0.92[ASN][1000 genomes]
rs73091959	0.92[ASN][1000 genomes]
rs73091976	0.92[AFR][1000 genomes]
rs73091981	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73091984	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73091986	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73091998	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094106	1.00[ASN][1000 genomes]
rs73094120	0.88[ASN][1000 genomes]
rs73094142	0.85[ASN][1000 genomes]
rs73100105	0.88[ASN][1000 genomes]
rs73100108	0.88[ASN][1000 genomes]
rs73100110	0.88[ASN][1000 genomes]
rs73100116	0.88[ASN][1000 genomes]
rs73100129	0.88[ASN][1000 genomes]
rs73100141	0.88[ASN][1000 genomes]
rs7531580	0.81[ASN][1000 genomes]
rs7545425	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215568400-215572600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:215570400-215571000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:215570400-215571000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:215570600-215571000	Active TSS	NHDF-Ad	bronchial
5	chr1:215570600-215574200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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