Variant report

Variant	rs35138477
Chromosome Location	chr1:155960513-155960514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:155959728-155960518	HL-60	blood:	n/a	n/a
2	STAT1	chr1:155960447-155960580	GM12878	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:155958637..155961186-chr1:155975621..155978419,3	MCF-7	breast:
2	chr1:155959707..155961223-chr1:156023678..156026675,2	K562	blood:
3	chr1:155902871..155906324-chr1:155958036..155960843,4	K562	blood:
4	chr1:155903740..155906324-chr1:155958823..155960843,2	K562	blood:
5	chr1:155946653..155948454-chr1:155959056..155961851,2	K562	blood:
6	chr1:155902685..155905586-chr1:155957752..155961229,4	MCF-7	breast:
7	chr1:155935970..155939693-chr1:155959127..155962229,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000224276	TF binding region
ARHGEF2	TF binding region
ENSG00000116584	Chromatin interaction
ENSG00000132680	Chromatin interaction
ENSG00000116586	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1010033	0.85[EUR][1000 genomes]
rs1018730	0.85[EUR][1000 genomes]
rs1055184	0.84[EUR][1000 genomes]
rs10908485	0.82[EUR][1000 genomes]
rs12039053	0.85[EUR][1000 genomes]
rs12138833	0.85[EUR][1000 genomes]
rs12747344	0.84[EUR][1000 genomes]
rs1749409	0.84[EUR][1000 genomes]
rs1765275	0.82[EUR][1000 genomes]
rs1964951	0.86[EUR][1000 genomes]
rs2275079	0.84[EUR][1000 genomes]
rs2275081	0.84[EUR][1000 genomes]
rs2364402	0.85[EUR][1000 genomes]
rs2364404	0.85[EUR][1000 genomes]
rs28379575	0.84[EUR][1000 genomes]
rs2886069	0.85[EUR][1000 genomes]
rs34802187	0.84[EUR][1000 genomes]
rs35374730	0.81[EUR][1000 genomes]
rs35588936	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35730001	0.86[EUR][1000 genomes]
rs3768280	0.84[EUR][1000 genomes]
rs4412586	0.84[EUR][1000 genomes]
rs4661160	0.85[EUR][1000 genomes]
rs4661162	0.85[EUR][1000 genomes]
rs4661170	0.84[EUR][1000 genomes]
rs4661172	0.85[EUR][1000 genomes]
rs493446	0.84[EUR][1000 genomes]
rs506688	0.84[EUR][1000 genomes]
rs527113	0.84[EUR][1000 genomes]
rs536870	0.84[EUR][1000 genomes]
rs572609	0.84[EUR][1000 genomes]
rs605025	0.82[EUR][1000 genomes]
rs6660802	0.84[EUR][1000 genomes]
rs6667096	0.84[EUR][1000 genomes]
rs708614	0.84[EUR][1000 genomes]
rs71628697	0.82[EUR][1000 genomes]
rs71628699	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs822503	0.83[EUR][1000 genomes]
rs822653	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155952000-155960800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:155953600-155960800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:155954400-155960800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:155954600-155970800	Weak transcription	NHEK	skin
5	chr1:155958600-155960600	Enhancers	Primary B cells from peripheral blood	blood
6	chr1:155958600-155961000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:155958600-155961600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr1:155958800-155960600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:155958800-155961600	Enhancers	Placenta	Placenta
10	chr1:155959000-155960800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr1:155959000-155961800	Enhancers	Liver	Liver
12	chr1:155959200-155961000	Weak transcription	NH-A	brain
13	chr1:155959200-155966000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr1:155959200-155978200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr1:155959400-155960600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:155959400-155960600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr1:155959400-155960600	Weak transcription	Fetal Brain Female	brain
18	chr1:155959400-155960800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:155959400-155960800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:155959400-155960800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr1:155959400-155960800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr1:155959400-155960800	Enhancers	Fetal Muscle Leg	muscle
23	chr1:155959400-155960800	Enhancers	Spleen	Spleen
24	chr1:155959400-155960800	Weak transcription	HMEC	breast
25	chr1:155959400-155961600	Enhancers	NHDF-Ad	bronchial
26	chr1:155959400-155962000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr1:155959400-155965000	Weak transcription	Pancreas	Pancrea
28	chr1:155959400-155965800	Weak transcription	HSMMtube	muscle
29	chr1:155959400-155970800	Weak transcription	Colonic Mucosa	Colon
30	chr1:155959400-155976600	Weak transcription	Aorta	Aorta
31	chr1:155959600-155960600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr1:155959600-155960600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr1:155959600-155960600	Weak transcription	Lung	lung
34	chr1:155959600-155960600	Genic enhancers	Hela-S3	cervix
35	chr1:155959600-155960800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:155959600-155960800	Weak transcription	HSMM	muscle
37	chr1:155959600-155960800	Weak transcription	NHLF	lung
38	chr1:155959600-155960800	Weak transcription	Osteobl	bone
39	chr1:155959600-155961200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr1:155959600-155964400	Weak transcription	Fetal Intestine Large	intestine
41	chr1:155959600-155964400	Weak transcription	Fetal Intestine Small	intestine
42	chr1:155959600-155965400	Weak transcription	Right Atrium	heart
43	chr1:155959600-155970400	Weak transcription	Stomach Mucosa	stomach
44	chr1:155959600-155971000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr1:155959600-155971800	Weak transcription	Gastric	stomach
46	chr1:155959800-155960600	Enhancers	HepG2	liver
47	chr1:155959800-155960800	Weak transcription	Brain Angular Gyrus	brain
48	chr1:155959800-155960800	Weak transcription	Brain Anterior Caudate	brain
49	chr1:155959800-155960800	Weak transcription	Brain Hippocampus Middle	brain
50	chr1:155959800-155960800	Weak transcription	Brain Inferior Temporal Lobe	brain

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