Variant report

Variant	rs35139304
Chromosome Location	chr5:119591644-119591645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11241541	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11241544	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11952010	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11953656	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12514405	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12516817	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12521979	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12655926	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12655927	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12655944	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13171088	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13188486	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1422388	0.98[ASN][1000 genomes]
rs1422391	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2405803	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36047600	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36064957	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36079833	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66864061	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6886288	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71586476	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023146	chr5:119301891-119623417	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537883	chr5:119301891-119623417	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv432803	chr5:119419101-119659101	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv882782	chr5:119526332-119627087	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv882783	chr5:119532996-119605609	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
7	nsv882784	chr5:119537259-119606988	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv882785	chr5:119557828-119606988	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119590000-119591800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr5:119590000-119592200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr5:119590400-119591800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr5:119591000-119591800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:119591200-119592200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:119591400-119591800	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr5:119591600-119591800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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