Variant report

Variant	rs35151674
Chromosome Location	chr7:101476526-101476527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101476458..101480622-chr7:101482401..101486770,4	K562	blood:
2	chr7:101456314..101463577-chr7:101474956..101483680,15	K562	blood:
3	chr7:101475766..101478658-chr7:101485506..101487243,2	K562	blood:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13232623	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35353051	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3779056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71559433	0.86[EUR][1000 genomes]
rs868416	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv824243	chr7:101445202-101479651	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv521041	chr7:101458144-101496391	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101461200-101486200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:101461800-101477000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:101461800-101489200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:101462000-101477000	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:101462200-101482200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:101462200-101484200	Weak transcription	Fetal Kidney	kidney
7	chr7:101463800-101489800	Weak transcription	NHEK	skin
8	chr7:101464400-101478400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:101464600-101488800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:101465800-101482000	Weak transcription	K562	blood
11	chr7:101466800-101482200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr7:101466800-101489800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr7:101466800-101498400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:101467000-101480200	Weak transcription	Aorta	Aorta
15	chr7:101467000-101480200	Weak transcription	Pancreas	Pancrea
16	chr7:101467000-101480600	Weak transcription	HSMM	muscle
17	chr7:101467000-101482000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr7:101467200-101477000	Weak transcription	Brain Substantia Nigra	brain
19	chr7:101467200-101481800	Weak transcription	Liver	Liver
20	chr7:101467200-101490400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:101467400-101490400	Weak transcription	Fetal Lung	lung
22	chr7:101467600-101476800	Strong transcription	Fetal Intestine Small	intestine
23	chr7:101468800-101486600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr7:101469000-101483000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr7:101469000-101486600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr7:101469000-101489800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:101469200-101489800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr7:101469400-101476600	Weak transcription	Colon Smooth Muscle	Colon
29	chr7:101469400-101487000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr7:101469400-101489800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr7:101469600-101480000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:101469600-101487000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr7:101469600-101490000	Weak transcription	HepG2	liver
34	chr7:101470000-101480200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr7:101470000-101482400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr7:101470000-101496600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr7:101470200-101482200	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr7:101470200-101482200	Weak transcription	Ovary	ovary
39	chr7:101471000-101477200	Strong transcription	Fetal Stomach	stomach
40	chr7:101471400-101477400	Strong transcription	Thymus	Thymus
41	chr7:101472000-101477200	Weak transcription	GM12878-XiMat	blood
42	chr7:101472000-101486800	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr7:101472000-101490400	Weak transcription	Osteobl	bone
44	chr7:101472200-101476800	Weak transcription	Primary B cells from cord blood	blood
45	chr7:101472200-101477000	Weak transcription	Brain Anterior Caudate	brain
46	chr7:101472200-101477000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr7:101472400-101489400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr7:101472600-101481800	Weak transcription	Right Atrium	heart
49	chr7:101472600-101482000	Weak transcription	Fetal Heart	heart
50	chr7:101472800-101488600	Weak transcription	Hela-S3	cervix

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