Variant report

Variant	rs35184720
Chromosome Location	chr20:24388722-24388723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10154028	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10485832	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11906542	1.00[EUR][1000 genomes]
rs11907112	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11907557	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11908668	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11908670	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13433130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13433219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13433381	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16986523	0.87[EUR][1000 genomes]
rs16986554	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2206647	1.00[EUR][1000 genomes]
rs2206648	1.00[EUR][1000 genomes]
rs2386950	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4378873	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4536719	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55911906	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56210745	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56891012	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57391168	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57442266	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57528196	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59144661	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59196447	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59479539	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60092562	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60924123	1.00[EUR][1000 genomes]
rs6106865	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6106870	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6106871	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6106875	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6106876	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6114688	1.00[EUR][1000 genomes]
rs6114691	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114698	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6114701	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6114702	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6114704	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6114705	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6114709	1.00[AMR][1000 genomes]
rs6114710	1.00[AMR][1000 genomes]
rs6114728	0.87[AMR][1000 genomes]
rs6114731	0.82[AMR][1000 genomes]
rs6515493	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66502369	1.00[EUR][1000 genomes]
rs67248734	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67693005	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs68032297	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7265757	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7265908	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7272592	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7360577	1.00[EUR][1000 genomes]
rs7362821	1.00[EUR][1000 genomes]
rs8114637	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8114747	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8120542	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9974024	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3521655	chr20:24388002-24390600	Bivalent Enhancer Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3521654	chr20:24388373-24390335	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3521653	chr20:24388564-24389701	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3521657	chr20:24388587-24389669	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv3454232	chr20:24388588-24389683	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3454231	chr20:24388609-24389655	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv3521656	chr20:24388634-24389616	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv3454229	chr20:24388635-24389626	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv3454233	chr20:24388723-24389584	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24384000-24390200	Weak transcription	Fetal Brain Female	brain
2	chr20:24387600-24388800	Enhancers	Lung	lung
3	chr20:24387800-24392400	Weak transcription	Fetal Thymus	thymus
4	chr20:24388200-24390000	Weak transcription	Dnd41	blood
5	chr20:24388400-24389600	Weak transcription	Fetal Kidney	kidney
6	chr20:24388400-24390400	Weak transcription	Brain Substantia Nigra	brain
7	chr20:24388600-24389800	Weak transcription	Primary T cells from cord blood	blood
8	chr20:24388600-24391800	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links