Variant report

Variant	rs35189176
Chromosome Location	chr9:116674608-116674609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116667918..116669920-chr9:116674262..116678050,3	MCF-7	breast:
2	chr9:116666788..116668683-chr9:116673616..116675696,2	MCF-7	breast:
3	chr9:116637548..116639400-chr9:116672960..116675906,2	MCF-7	breast:
4	chr9:116637168..116640079-chr9:116674442..116676452,2	MCF-7	breast:
5	chr9:116666574..116671426-chr9:116673853..116679155,7	K562	blood:

Variant related genes	Relation type
ENSG00000157657	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10116566	0.82[ASN][1000 genomes]
rs10122390	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10123606	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10513222	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10817532	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982000	0.82[ASN][1000 genomes]
rs2183364	0.83[EUR][1000 genomes]
rs2900568	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2900569	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4979296	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4979297	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7026176	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7029830	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7040839	0.80[ASN][1000 genomes]
rs7047895	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7852787	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7853127	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs882980	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs35189176	ZNF618	cis	brain	BrainEAC
rs35189176	ZNF618	cis	cerebellar cortex	BrainEAC

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116651200-116675000	Weak transcription	Colon Smooth Muscle	Colon
2	chr9:116659400-116685400	Weak transcription	A549	lung
3	chr9:116666400-116683800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr9:116666600-116683000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:116667400-116684400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:116668000-116681800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:116668800-116678800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:116669400-116675000	Weak transcription	Adipose Nuclei	Adipose
9	chr9:116669400-116675400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:116669400-116675400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:116669400-116683000	Weak transcription	Osteobl	bone
12	chr9:116669600-116675000	Weak transcription	NHDF-Ad	bronchial
13	chr9:116669600-116690400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr9:116669800-116675400	Weak transcription	Right Atrium	heart
15	chr9:116669800-116683600	Weak transcription	HUVEC	blood vessel
16	chr9:116670000-116675200	Weak transcription	Psoas Muscle	Psoas
17	chr9:116670000-116675600	Weak transcription	Small Intestine	intestine
18	chr9:116671200-116677400	Weak transcription	Thymus	Thymus
19	chr9:116671600-116675000	Weak transcription	Spleen	Spleen
20	chr9:116671600-116676800	Enhancers	Stomach Mucosa	stomach
21	chr9:116671600-116678000	Weak transcription	Fetal Intestine Large	intestine
22	chr9:116672000-116682000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr9:116672600-116674800	Weak transcription	Lung	lung
24	chr9:116672600-116675400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr9:116672600-116684800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr9:116672800-116675000	Weak transcription	Fetal Intestine Small	intestine
27	chr9:116672800-116681800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr9:116673000-116676800	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr9:116673600-116676200	Enhancers	Pancreas	Pancrea
30	chr9:116673600-116677000	Enhancers	Fetal Muscle Leg	muscle
31	chr9:116673600-116677800	Enhancers	Ovary	ovary
32	chr9:116674000-116674800	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr9:116674000-116674800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr9:116674000-116677200	Enhancers	Fetal Muscle Trunk	muscle
35	chr9:116674200-116675000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr9:116674200-116675000	Enhancers	Brain Germinal Matrix	brain
37	chr9:116674200-116675400	Enhancers	Fetal Kidney	kidney
38	chr9:116674200-116675400	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr9:116674200-116675600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr9:116674200-116675800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr9:116674200-116675800	Enhancers	Esophagus	oesophagus
42	chr9:116674200-116675800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr9:116674200-116675800	Enhancers	NHLF	lung
44	chr9:116674200-116676000	Enhancers	Gastric	stomach
45	chr9:116674200-116676200	Enhancers	Fetal Lung	lung
46	chr9:116674200-116677600	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr9:116674200-116678200	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr9:116674400-116674800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr9:116674400-116674800	Enhancers	Brain Anterior Caudate	brain
50	chr9:116674400-116675000	Enhancers	H1 Cell Line	embryonic stem cell

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