Variant report

Variant	rs35189300
Chromosome Location	chr4:100551502-100551503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr4:100551400-100551550	NHEK	skin:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100549968..100552263-chr4:100558300..100560631,2	MCF-7	breast:
2	chr4:100542629..100544781-chr4:100550166..100551692,2	K562	blood:

Variant related genes	Relation type
ENSG00000248676	TF binding region

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11097666	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13121590	0.81[EUR][1000 genomes]
rs13129571	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13135675	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13135826	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13142452	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13151234	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17029189	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17029211	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17029213	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17029215	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17029260	0.93[EUR][1000 genomes]
rs17029263	0.93[EUR][1000 genomes]
rs34135026	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34246356	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34678000	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34734558	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34756677	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34777713	0.87[EUR][1000 genomes]
rs34870956	0.93[EUR][1000 genomes]
rs34874297	0.93[EUR][1000 genomes]
rs35074439	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35391161	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35402611	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35561084	0.87[EUR][1000 genomes]
rs35595171	0.87[EUR][1000 genomes]
rs35661838	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35824615	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35826214	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35992230	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs41275719	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6532821	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6825904	0.93[EUR][1000 genomes]
rs6851824	0.93[EUR][1000 genomes]
rs71612697	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71612700	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71612702	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71614603	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71619723	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7665414	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7667001	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7688278	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7695727	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100538200-100556000	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:100544000-100551600	Weak transcription	Fetal Intestine Small	intestine
3	chr4:100544000-100553200	Weak transcription	Psoas Muscle	Psoas
4	chr4:100546000-100561200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:100546200-100551600	Weak transcription	Ovary	ovary
6	chr4:100546200-100553800	Weak transcription	Liver	Liver
7	chr4:100551000-100551600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:100551000-100551800	Enhancers	NHEK	skin
9	chr4:100551200-100551600	Enhancers	HMEC	breast
10	chr4:100551400-100555200	Enhancers	Skeletal Muscle Female	skeletal muscle

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