Variant report

Variant	rs35193138
Chromosome Location	chr3:119930477-119930478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1079784	0.83[AMR][1000 genomes]
rs10934520	0.86[AMR][1000 genomes]
rs12494395	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13064815	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13091848	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1492272	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2029607	0.86[AMR][1000 genomes]
rs34014378	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34032950	0.83[AMR][1000 genomes]
rs34720062	0.83[AMR][1000 genomes]
rs34829073	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34964758	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34998142	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35280462	0.83[AMR][1000 genomes]
rs35791817	0.86[AMR][1000 genomes]
rs35902169	0.86[AMR][1000 genomes]
rs35977875	0.83[AMR][1000 genomes]
rs4676676	0.81[AMR][1000 genomes]
rs55861253	0.81[AMR][1000 genomes]
rs55871529	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56103727	0.81[AMR][1000 genomes]
rs6438574	0.83[ASN][1000 genomes]
rs7612000	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7630226	0.81[AMR][1000 genomes]
rs7634938	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv877376	chr3:119824037-120119446	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1007557	chr3:119892894-120764353	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv536706	chr3:119892894-120764353	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119925200-119930600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr3:119930200-119931000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr3:119930400-119931600	Enhancers	Monocytes-CD14+_RO01746	blood

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