Variant report

Variant	rs35215140
Chromosome Location	chr8:126200988-126200989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126199463..126202263-chr8:126440373..126443128,2	K562	blood:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12675943	0.84[EUR][1000 genomes]
rs13253942	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254947	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13259062	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13262348	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13264500	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs13267325	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13273034	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13273231	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13273421	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13277490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16900452	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17310558	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17401283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2384882	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34110249	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34246020	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34298715	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34427316	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34448805	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34461511	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34694976	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34737949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34903473	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35033076	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35140299	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35336507	0.86[EUR][1000 genomes]
rs35401436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35475899	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35564243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35774093	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35822368	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35861494	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35955519	0.86[EUR][1000 genomes]
rs35991395	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36081564	1.00[ASN][1000 genomes]
rs3923300	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4360308	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4477044	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4601329	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4871570	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56135036	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66561774	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66826725	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66929016	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71516763	0.92[ASN][1000 genomes]
rs71516769	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72720550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720569	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv917158	chr8:126101990-126255266	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
4	nsv1034798	chr8:126179383-126241525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv981979	chr8:126200290-126201826	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126137600-126213600	Weak transcription	Fetal Stomach	stomach
2	chr8:126142600-126231400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:126172000-126201000	Weak transcription	Fetal Thymus	thymus
4	chr8:126179400-126208800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr8:126182000-126217600	Weak transcription	Fetal Kidney	kidney
6	chr8:126182400-126201000	Weak transcription	HepG2	liver
7	chr8:126187400-126204000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr8:126187600-126201000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr8:126187800-126202400	Weak transcription	HSMM	muscle
10	chr8:126188000-126201000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr8:126188600-126201200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr8:126189000-126201200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr8:126189200-126203600	Weak transcription	Small Intestine	intestine
14	chr8:126189200-126204400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:126190200-126201000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr8:126190400-126201000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr8:126190600-126201000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:126192800-126201400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr8:126193800-126201000	Weak transcription	HUVEC	blood vessel
20	chr8:126194200-126201000	Weak transcription	Left Ventricle	heart
21	chr8:126194200-126201600	Weak transcription	Right Ventricle	heart
22	chr8:126194200-126226000	Weak transcription	Ovary	ovary
23	chr8:126194400-126204000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr8:126195800-126201000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr8:126196200-126201000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr8:126197400-126203400	Weak transcription	Stomach Mucosa	stomach
27	chr8:126197600-126201000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr8:126197800-126201000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr8:126198800-126214000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr8:126199000-126203400	Weak transcription	K562	blood
31	chr8:126199400-126203600	ZNF genes & repeats	GM12878-XiMat	blood
32	chr8:126199600-126203800	Weak transcription	Fetal Heart	heart
33	chr8:126199800-126201000	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr8:126200200-126201000	Weak transcription	Lung	lung
35	chr8:126200200-126201600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
36	chr8:126200200-126201600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr8:126200200-126201600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr8:126200200-126201600	ZNF genes & repeats	Dnd41	blood
39	chr8:126200200-126201800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
40	chr8:126200200-126201800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
41	chr8:126200200-126201800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr8:126200200-126201800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
43	chr8:126200200-126202000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr8:126200200-126202600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr8:126200200-126202800	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr8:126200400-126201000	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr8:126200400-126201000	ZNF genes & repeats	Hela-S3	cervix
48	chr8:126200400-126201200	Strong transcription	Rectal Smooth Muscle	rectum
49	chr8:126200400-126201600	ZNF genes & repeats	Primary T cells from cord blood	blood
50	chr8:126200400-126201600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood

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