Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11756003	0.82[AMR][1000 genomes]
rs11759412	0.85[EUR][1000 genomes]
rs28360598	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34175679	0.82[AMR][1000 genomes]
rs35684248	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35713382	0.90[EUR][1000 genomes]
rs4129937	0.85[EUR][1000 genomes]
rs4131857	0.86[ASN][1000 genomes]
rs4132045	0.84[EUR][1000 genomes]
rs4236098	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4331981	0.83[EUR][1000 genomes]
rs4711897	0.86[EUR][1000 genomes]
rs4715045	0.92[EUR][1000 genomes]
rs62386820	0.82[AMR][1000 genomes]
rs62386821	0.92[AMR][1000 genomes]
rs6936052	0.86[ASN][1000 genomes]
rs7775901	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9349439	0.85[EUR][1000 genomes]
rs9367308	0.82[EUR][1000 genomes]
rs9381635	0.85[EUR][1000 genomes]
rs9395336	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12976000-12990200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:12979600-13001800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:12982600-12990400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:12982600-13002400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:12983400-12989000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:12986800-12988400	Enhancers	Fetal Heart	heart
7	chr6:12987000-12988400	Enhancers	Brain Angular Gyrus	brain
8	chr6:12987000-12990600	Weak transcription	Right Ventricle	heart
9	chr6:12987800-12988400	Enhancers	Left Ventricle	heart
10	chr6:12988200-12988400	Enhancers	Brain Cingulate Gyrus	brain
11	chr6:12988200-12988600	Weak transcription	Aorta	Aorta

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