Variant report

Variant	rs35245309
Chromosome Location	chr3:23419624-23419625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs12106681	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13059155	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13059557	0.83[EUR][1000 genomes]
rs13060112	0.81[AMR][1000 genomes]
rs13060251	0.88[EUR][1000 genomes]
rs13063451	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13065375	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13065646	0.84[EUR][1000 genomes]
rs13066741	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13070136	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13071171	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13072325	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13073761	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13076412	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13076527	0.97[EUR][1000 genomes]
rs13078970	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13082311	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13084870	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13085173	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13085266	0.97[EUR][1000 genomes]
rs13087238	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13087563	0.88[EUR][1000 genomes]
rs13088756	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13090125	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13090335	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13090633	0.86[EUR][1000 genomes]
rs13091625	0.98[EUR][1000 genomes]
rs13091634	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13092830	0.89[EUR][1000 genomes]
rs13095737	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13096187	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13098798	0.86[EUR][1000 genomes]
rs13099586	0.81[AMR][1000 genomes]
rs13100499	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13100605	0.88[EUR][1000 genomes]
rs34134134	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34171096	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34225647	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34322396	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34443476	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34474714	0.97[EUR][1000 genomes]
rs34504120	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34584255	0.88[EUR][1000 genomes]
rs34619482	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34732257	0.97[EUR][1000 genomes]
rs34743949	0.91[EUR][1000 genomes]
rs34758087	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34804976	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34827773	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34894979	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34916096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34916962	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34928966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35021696	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35027557	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35028631	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35055753	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35096750	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35105861	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35121170	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35152860	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35156003	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35177750	0.98[EUR][1000 genomes]
rs35179250	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35190363	0.97[EUR][1000 genomes]
rs35209889	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35218978	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35230557	0.97[EUR][1000 genomes]
rs35240920	0.88[EUR][1000 genomes]
rs35266274	0.86[EUR][1000 genomes]
rs35273607	1.00[EUR][1000 genomes]
rs35314441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35346188	0.88[EUR][1000 genomes]
rs35347265	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35383024	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35402533	0.91[EUR][1000 genomes]
rs35408638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35497505	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35587590	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35649850	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35657558	0.91[EUR][1000 genomes]
rs35776486	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35778452	0.98[EUR][1000 genomes]
rs35869522	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35902312	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35907941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35928592	0.97[EUR][1000 genomes]
rs35975795	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36021750	0.98[EUR][1000 genomes]
rs36082634	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36123979	0.88[EUR][1000 genomes]
rs36124326	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36183485	0.86[EUR][1000 genomes]
rs58522464	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60074421	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71317820	0.81[AMR][1000 genomes]
rs71317821	0.81[AMR][1000 genomes]
rs71317822	0.81[AMR][1000 genomes]
rs71317827	0.88[EUR][1000 genomes]
rs71317829	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71317834	0.83[EUR][1000 genomes]
rs71322171	0.91[EUR][1000 genomes]
rs71322172	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71322173	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71322174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71322183	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71322184	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71322185	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71322187	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71322189	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71322190	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71322195	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1007373	chr3:23367952-23710331	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv876624	chr3:23385877-23483536	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv876625	chr3:23390301-23509597	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1012236	chr3:23408427-23469063	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1010032	chr3:23408985-23469063	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23409200-23431800	Weak transcription	Aorta	Aorta
2	chr3:23410800-23426800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:23415000-23422000	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:23418000-23420400	Enhancers	Primary B cells from peripheral blood	blood
5	chr3:23418600-23420200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:23418600-23420200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:23418600-23420400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:23418600-23420600	Enhancers	GM12878-XiMat	blood
9	chr3:23418800-23419800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr3:23418800-23420200	Enhancers	Primary hematopoietic stem cells	blood
11	chr3:23418800-23420400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:23418800-23425400	Weak transcription	Psoas Muscle	Psoas
13	chr3:23419000-23419800	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr3:23419000-23426800	Weak transcription	Brain Substantia Nigra	brain
15	chr3:23419200-23429000	Weak transcription	Brain Angular Gyrus	brain
16	chr3:23419600-23420000	Enhancers	Primary T cells from cord blood	blood
17	chr3:23419600-23420200	Flanking Active TSS	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links