Variant report

Variant	rs35248527
Chromosome Location	chr3:105258850-105258851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16851323	1.00[AMR][1000 genomes]
rs55866944	1.00[AMR][1000 genomes]
rs55924889	1.00[AMR][1000 genomes]
rs56236143	1.00[AMR][1000 genomes]
rs58474331	1.00[AMR][1000 genomes]
rs58999138	1.00[AMR][1000 genomes]
rs6437596	1.00[AMR][1000 genomes]
rs6437597	1.00[AMR][1000 genomes]
rs6437598	1.00[AMR][1000 genomes]
rs6765665	1.00[AMR][1000 genomes]
rs6793359	1.00[AMR][1000 genomes]
rs73854306	1.00[AMR][1000 genomes]
rs73854308	1.00[AMR][1000 genomes]
rs73854309	1.00[AMR][1000 genomes]
rs73854310	1.00[AMR][1000 genomes]
rs7618851	1.00[AMR][1000 genomes]
rs7632648	1.00[AMR][1000 genomes]
rs7632662	1.00[AMR][1000 genomes]
rs7640268	1.00[AMR][1000 genomes]
rs7646694	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv534224	chr3:105141696-105404293	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv829651	chr3:105203424-105402136	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv460811	chr3:105212993-105316769	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv591240	chr3:105212993-105316769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105221400-105300400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:105222200-105260600	Weak transcription	Fetal Kidney	kidney
3	chr3:105223800-105274800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:105229600-105260400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:105230200-105262600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:105232200-105274000	Weak transcription	HSMMtube	muscle
7	chr3:105234200-105260400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:105234600-105260600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:105234600-105261000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:105234600-105274600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:105237800-105259000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:105237800-105274600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:105237800-105275800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr3:105241000-105260400	Weak transcription	Pancreas	Pancrea
15	chr3:105241600-105260200	Weak transcription	HepG2	liver
16	chr3:105241800-105259000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr3:105242000-105259800	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr3:105242000-105293600	Weak transcription	Lung	lung
19	chr3:105242200-105259000	Weak transcription	Ovary	ovary
20	chr3:105242400-105280400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr3:105242800-105266800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr3:105243200-105259000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr3:105244800-105275800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr3:105245200-105259200	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr3:105245600-105260400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:105245800-105260600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr3:105245800-105268000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr3:105246600-105284400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr3:105247400-105260400	Weak transcription	Brain Anterior Caudate	brain
30	chr3:105247800-105259200	Weak transcription	Brain Angular Gyrus	brain
31	chr3:105248000-105281200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:105248200-105262800	Weak transcription	NHLF	lung
33	chr3:105248400-105291200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr3:105249400-105278600	Weak transcription	Small Intestine	intestine
35	chr3:105249800-105261200	Weak transcription	Fetal Intestine Small	intestine
36	chr3:105249800-105263400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr3:105249800-105284000	Weak transcription	Fetal Stomach	stomach
38	chr3:105249800-105285200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr3:105250600-105262600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr3:105250600-105270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr3:105251200-105266400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr3:105251800-105274400	Weak transcription	Dnd41	blood
43	chr3:105252600-105263400	Weak transcription	Left Ventricle	heart
44	chr3:105253000-105259400	Weak transcription	Stomach Smooth Muscle	stomach
45	chr3:105253200-105273000	Weak transcription	Gastric	stomach
46	chr3:105253600-105260400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:105253600-105260400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr3:105253800-105259400	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr3:105253800-105260400	Weak transcription	Aorta	Aorta
50	chr3:105253800-105270000	Weak transcription	Fetal Intestine Large	intestine

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