Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10518543	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12648004	0.85[AMR][1000 genomes]
rs12651152	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111663	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13127992	0.85[AMR][1000 genomes]
rs13138537	0.85[AMR][1000 genomes]
rs17014190	0.89[ASN][1000 genomes]
rs17184802	0.85[AMR][1000 genomes]
rs2068135	0.85[AMR][1000 genomes]
rs2068136	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28643269	0.89[ASN][1000 genomes]
rs34044129	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35053690	0.85[AMR][1000 genomes]
rs35128288	0.85[AMR][1000 genomes]
rs35349408	0.85[AMR][1000 genomes]
rs35388412	0.85[AMR][1000 genomes]
rs36000518	0.85[AMR][1000 genomes]
rs36101862	0.85[AMR][1000 genomes]
rs36124477	0.85[AMR][1000 genomes]
rs71612199	0.85[AMR][1000 genomes]
rs71613908	0.85[AMR][1000 genomes]
rs71613914	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130032400-130052200	Weak transcription	Aorta	Aorta
2	chr4:130036000-130044600	Weak transcription	Pancreas	Pancrea

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