Variant report

Variant	rs35260629
Chromosome Location	chr19:42908129-42908130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:42904315..42908218-chr19:42909528..42916555,10	K562	blood:

Variant related genes	Relation type
ENSG00000079435	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11878959	1.00[AMR][1000 genomes]
rs11882606	1.00[AMR][1000 genomes]
rs11883099	1.00[AMR][1000 genomes]
rs11883406	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36024215	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45618138	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61739430	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv520239	chr19:42357455-42931004	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv911782	chr19:42514712-42931004	Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
4	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
5	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
6	nsv911785	chr19:42741124-42917545	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
7	nsv911788	chr19:42887492-42930652	Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv911791	chr19:42901430-42909478	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv911792	chr19:42901430-42929254	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv911793	chr19:42901430-42929502	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv911794	chr19:42901430-42930652	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv911795	chr19:42901430-42932699	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
13	nsv579632	chr19:42904653-42912403	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
14	nsv911798	chr19:42904653-42930652	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv911799	chr19:42905645-42930652	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	nsv911800	chr19:42906914-42930652	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42906200-42911000	Weak transcription	Gastric	stomach
2	chr19:42906200-42926200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr19:42906400-42908800	Weak transcription	GM12878-XiMat	blood
4	chr19:42906400-42910000	Weak transcription	Left Ventricle	heart
5	chr19:42906400-42913200	Weak transcription	HSMMtube	muscle
6	chr19:42906400-42913600	Weak transcription	Psoas Muscle	Psoas
7	chr19:42906400-42913600	Weak transcription	Stomach Mucosa	stomach
8	chr19:42906400-42913600	Weak transcription	HSMM	muscle
9	chr19:42906400-42915800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr19:42906400-42916200	Weak transcription	HMEC	breast
11	chr19:42906400-42924400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr19:42906400-42926400	Weak transcription	Colonic Mucosa	Colon
13	chr19:42906600-42909400	Weak transcription	NHLF	lung
14	chr19:42906600-42910400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr19:42906600-42911000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr19:42906600-42911400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr19:42906600-42913600	Weak transcription	Colon Smooth Muscle	Colon
18	chr19:42906600-42918600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr19:42906600-42926400	Weak transcription	Fetal Lung	lung
20	chr19:42906800-42908800	Weak transcription	Primary B cells from cord blood	blood
21	chr19:42906800-42908800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr19:42906800-42908800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr19:42906800-42908800	Weak transcription	Fetal Intestine Large	intestine
24	chr19:42906800-42909600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr19:42906800-42909800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr19:42906800-42910000	Weak transcription	Right Atrium	heart
27	chr19:42906800-42910200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr19:42906800-42910400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr19:42906800-42910800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr19:42906800-42913600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr19:42906800-42916600	Strong transcription	Fetal Intestine Small	intestine
32	chr19:42906800-42916800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr19:42906800-42923200	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr19:42906800-42924000	Weak transcription	A549	lung
35	chr19:42906800-42924400	Weak transcription	Osteobl	bone
36	chr19:42906800-42925200	Weak transcription	Primary hematopoietic stem cells	blood
37	chr19:42907000-42908200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr19:42907000-42908200	Strong transcription	NHEK	skin
39	chr19:42907000-42908600	Weak transcription	Brain Angular Gyrus	brain
40	chr19:42907000-42908800	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr19:42907000-42908800	Weak transcription	Fetal Muscle Leg	muscle
42	chr19:42907000-42909200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr19:42907000-42909400	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr19:42907000-42909400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr19:42907000-42909400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr19:42907000-42910200	Weak transcription	Lung	lung
47	chr19:42907000-42910400	Weak transcription	Ovary	ovary
48	chr19:42907000-42910600	Weak transcription	NH-A	brain
49	chr19:42907000-42911200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr19:42907000-42912400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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