Variant report

Variant	rs35264561
Chromosome Location	chr2:210893766-210893767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr2:210893551-210893981	HepG2	liver:	n/a	chr2:210893903-210893915
2	POLR2A	chr2:210892433-210894868	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr2:210893550-210893795	HepG2	liver:	n/a	n/a
4	POLR2A	chr2:210893459-210893778	U87	brain:	n/a	n/a
5	POLR2A	chr2:210893567-210893771	GM12891	blood:	n/a	n/a
6	POLR2A	chr2:210893317-210893793	U87	brain:	n/a	n/a
7	POLR2A	chr2:210890345-210900284	K562	blood:	n/a	n/a
8	POLR2A	chr2:210892282-210894168	GM12878	blood:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:210892466..210894777-chr2:210895081..210897160,2	K562	blood:
2	chr2:210867212..210869682-chr2:210892589..210895075,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPE-4	chr2:210893141-210893880	ENSG00000272807.1

No data

Variant related genes	Relation type
ENSG00000229127	TF binding region
ENSG00000229127	Chromatin interaction
ENSG00000197713	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10183204	1.00[AMR][1000 genomes]
rs10192256	1.00[AMR][1000 genomes]
rs10200097	1.00[AMR][1000 genomes]
rs10210462	1.00[AMR][1000 genomes]
rs11885370	1.00[AMR][1000 genomes]
rs11898086	1.00[AMR][1000 genomes]
rs11898587	1.00[AMR][1000 genomes]
rs11899048	1.00[AMR][1000 genomes]
rs11901653	1.00[AMR][1000 genomes]
rs13395167	1.00[AMR][1000 genomes]
rs13405054	1.00[AMR][1000 genomes]
rs13414717	1.00[AMR][1000 genomes]
rs28621658	1.00[AMR][1000 genomes]
rs28668171	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1004426	chr2:210709999-211001680	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv1795338	chr2:210758078-211098113	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210868000-210920000	Weak transcription	Spleen	Spleen
2	chr2:210868400-210899000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:210871000-210893800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:210871200-210911400	Weak transcription	Psoas Muscle	Psoas
5	chr2:210872400-210893800	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr2:210872600-210907600	Weak transcription	Stomach Mucosa	stomach
7	chr2:210872800-210894200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:210873000-210893800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr2:210874000-210920800	Weak transcription	Fetal Heart	heart
10	chr2:210874200-210893800	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr2:210879400-210894200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr2:210880200-210896200	Weak transcription	K562	blood
13	chr2:210881800-210953000	Weak transcription	Gastric	stomach
14	chr2:210882400-210911400	Weak transcription	Esophagus	oesophagus
15	chr2:210882400-210914600	Weak transcription	Small Intestine	intestine
16	chr2:210882400-210919400	Weak transcription	Brain Hippocampus Middle	brain
17	chr2:210882400-210922800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr2:210882400-210927800	Weak transcription	Right Ventricle	heart
19	chr2:210882800-210911400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr2:210883000-210920600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr2:210883400-210911200	Weak transcription	Aorta	Aorta
22	chr2:210883400-210911200	Weak transcription	Pancreas	Pancrea
23	chr2:210883600-210911400	Weak transcription	Lung	lung
24	chr2:210884600-210911000	Weak transcription	Ovary	ovary
25	chr2:210884600-210912600	Weak transcription	Colon Smooth Muscle	Colon
26	chr2:210885200-210896200	Weak transcription	NHEK	skin
27	chr2:210885200-210914400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr2:210887200-210896600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr2:210887800-210919600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr2:210888000-210913400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:210888200-210905400	Weak transcription	Fetal Brain Female	brain
32	chr2:210888400-210897000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr2:210889000-210898400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr2:210889000-210905400	Weak transcription	NHDF-Ad	bronchial
35	chr2:210889000-210909200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr2:210889000-210911400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr2:210889000-210911400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr2:210889000-210912200	Weak transcription	HMEC	breast
39	chr2:210889000-210919400	Weak transcription	HSMMtube	muscle
40	chr2:210889000-210920200	Weak transcription	Fetal Brain Male	brain
41	chr2:210889000-210925600	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr2:210889200-210895000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr2:210889200-210896400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr2:210889200-210898600	Weak transcription	GM12878-XiMat	blood
45	chr2:210889200-210902800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr2:210889200-210911400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr2:210889200-210911400	Weak transcription	Left Ventricle	heart
48	chr2:210889200-210911600	Weak transcription	Fetal Muscle Trunk	muscle
49	chr2:210889200-210913400	Weak transcription	Primary B cells from peripheral blood	blood
50	chr2:210889200-210913400	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links