Variant report

Variant	rs35271996
Chromosome Location	chr13:67710211-67710212
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:67702842..67705667-chr13:67707651..67711312,4	K562	blood:
2	chr13:67685964..67690654-chr13:67706296..67711657,6	K562	blood:
3	chr13:67686001..67691093-chr13:67707345..67712221,5	K562	blood:
4	chr13:67701562..67704458-chr13:67707651..67710683,4	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12855007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12864857	0.84[EUR][1000 genomes]
rs12865366	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12869289	1.00[EUR][1000 genomes]
rs12876475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17195217	0.84[EUR][1000 genomes]
rs17195231	1.00[EUR][1000 genomes]
rs17195252	1.00[EUR][1000 genomes]
rs34007733	1.00[EUR][1000 genomes]
rs34439981	1.00[EUR][1000 genomes]
rs35346818	1.00[EUR][1000 genomes]
rs4300510	1.00[EUR][1000 genomes]
rs71427632	1.00[EUR][1000 genomes]
rs71427633	1.00[EUR][1000 genomes]
rs71427635	1.00[EUR][1000 genomes]
rs71446831	1.00[EUR][1000 genomes]
rs71446833	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1037217	chr13:67589937-67728156	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1039600	chr13:67593961-67726047	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv541823	chr13:67593961-67726047	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1053514	chr13:67687520-67775011	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67708200-67710600	Active TSS	Stomach Smooth Muscle	stomach
2	chr13:67709000-67710400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:67709000-67710600	Weak transcription	Fetal Lung	lung
4	chr13:67709000-67711400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:67709000-67711400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr13:67709000-67711400	Weak transcription	HSMM	muscle
7	chr13:67709000-67711400	Weak transcription	HSMMtube	muscle
8	chr13:67709200-67710600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr13:67709200-67711200	Weak transcription	Osteobl	bone
10	chr13:67709200-67711400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr13:67709200-67711400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:67709200-67711600	Weak transcription	HUVEC	blood vessel
13	chr13:67709400-67717800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr13:67709800-67710600	Flanking Active TSS	Brain Hippocampus Middle	brain
15	chr13:67709800-67711400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr13:67710000-67710400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
17	chr13:67710000-67710400	Flanking Active TSS	A549	lung
18	chr13:67710000-67710600	Enhancers	Brain Angular Gyrus	brain
19	chr13:67710000-67710600	Flanking Active TSS	Brain Substantia Nigra	brain
20	chr13:67710000-67710600	Flanking Active TSS	Fetal Heart	heart
21	chr13:67710000-67710800	Enhancers	Brain Anterior Caudate	brain
22	chr13:67710000-67712000	Enhancers	Liver	Liver
23	chr13:67710200-67710400	Enhancers	Brain Cingulate Gyrus	brain
24	chr13:67710200-67710400	Flanking Active TSS	K562	blood
25	chr13:67710200-67710600	Enhancers	Pancreas	Pancrea
26	chr13:67710200-67710600	Enhancers	Right Atrium	heart
27	chr13:67710200-67711000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr13:67710200-67712600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr13:67710200-67721000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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