Variant report

Variant	rs35275471
Chromosome Location	chr9:116105031-116105032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:116103587..116106029-chr9:116160047..116164950,6	MCF-7	breast:
2	chr9:116102720..116107904-chr9:116161009..116164019,5	MCF-7	breast:
3	chr9:116094633..116097880-chr9:116104158..116105941,3	MCF-7	breast:
4	chr9:116091449..116094429-chr9:116104938..116107109,2	MCF-7	breast:
5	chr9:116103857..116106255-chr9:116138187..116140554,2	MCF-7	breast:
6	chr9:116099899..116105558-chr9:116170913..116174361,7	MCF-7	breast:
7	chr9:116103291..116106183-chr9:116133139..116134993,2	K562	blood:
8	chr9:116063284..116065510-chr9:116102338..116105750,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000157653	Chromatin interaction
ENSG00000119431	Chromatin interaction
ENSG00000148229	Chromatin interaction
ENSG00000165188	Chromatin interaction
ENSG00000148218	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10817477	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10981711	0.84[EUR][1000 genomes]
rs10981714	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981718	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981719	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981721	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10981725	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10981736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10981754	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12350131	0.83[ASN][1000 genomes]
rs12684385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13289574	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932083	0.94[EUR][1000 genomes]
rs16932730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16932806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2296075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2296076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2418249	0.92[EUR][1000 genomes]
rs28480972	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34289746	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34294772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34429100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34749539	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35772163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35852964	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35860025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35915957	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3810920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59841233	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61161242	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71503561	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7850003	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv893744	chr9:115934852-116170227	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35275471	WDR31	cis	Esophagus Mucosa	GTEx

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116102800-116105800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:116103000-116105600	Weak transcription	Left Ventricle	heart
3	chr9:116103000-116106200	Weak transcription	Esophagus	oesophagus
4	chr9:116103000-116107200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:116103000-116111800	Weak transcription	Lung	lung
6	chr9:116103200-116105200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:116103200-116105400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:116103200-116105600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:116103200-116105600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:116103200-116105600	Weak transcription	Brain Anterior Caudate	brain
11	chr9:116103200-116105600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr9:116103200-116105600	Weak transcription	Brain Substantia Nigra	brain
13	chr9:116103200-116105600	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:116103200-116105600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr9:116103200-116105800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:116103200-116105800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr9:116103200-116105800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr9:116103200-116105800	Weak transcription	Fetal Intestine Small	intestine
19	chr9:116103200-116105800	Weak transcription	Fetal Lung	lung
20	chr9:116103200-116105800	Weak transcription	Fetal Muscle Leg	muscle
21	chr9:116103200-116105800	Weak transcription	NHDF-Ad	bronchial
22	chr9:116103200-116106000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr9:116103200-116106200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr9:116103200-116106200	Weak transcription	Colonic Mucosa	Colon
25	chr9:116103200-116106400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr9:116103200-116106400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr9:116103200-116107000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr9:116103200-116107200	Weak transcription	Brain Angular Gyrus	brain
29	chr9:116103200-116107400	Weak transcription	Fetal Intestine Large	intestine
30	chr9:116103200-116108000	Enhancers	Fetal Heart	heart
31	chr9:116103200-116108200	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr9:116103200-116108600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr9:116103200-116108800	Weak transcription	Placenta	Placenta
34	chr9:116103200-116110000	Weak transcription	Right Atrium	heart
35	chr9:116103200-116111400	Weak transcription	Stomach Mucosa	stomach
36	chr9:116103200-116111400	Weak transcription	GM12878-XiMat	blood
37	chr9:116103400-116105400	Weak transcription	Brain Hippocampus Middle	brain
38	chr9:116103400-116105600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr9:116103400-116105800	Weak transcription	Liver	Liver
40	chr9:116103400-116105800	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr9:116103400-116106200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr9:116103400-116106200	Weak transcription	Fetal Muscle Trunk	muscle
43	chr9:116103400-116106200	Weak transcription	Pancreas	Pancrea
44	chr9:116103400-116106600	Weak transcription	Adipose Nuclei	Adipose
45	chr9:116103600-116106200	Weak transcription	Fetal Stomach	stomach
46	chr9:116103800-116105600	Weak transcription	Rectal Smooth Muscle	rectum
47	chr9:116103800-116105600	Weak transcription	Dnd41	blood
48	chr9:116104000-116106200	Weak transcription	Hela-S3	cervix
49	chr9:116104000-116108400	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr9:116104200-116105600	Weak transcription	Primary hematopoietic stem cells	blood

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