Variant report
| Variant | rs35286197 |
|---|---|
| Chromosome Location | chr7:122347996-122347997 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10046586 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10256337 | 0.84[AMR][1000 genomes] |
| rs10265175 | 0.84[AMR][1000 genomes] |
| rs10268190 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10268368 | 0.84[AMR][1000 genomes] |
| rs12706434 | 0.84[AMR][1000 genomes] |
| rs13221540 | 0.84[AMR][1000 genomes] |
| rs13223497 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs13224171 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs13226270 | 0.84[AMR][1000 genomes] |
| rs13226382 | 0.84[AMR][1000 genomes] |
| rs13230792 | 0.84[AMR][1000 genomes] |
| rs13237142 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs13239569 | 0.84[AMR][1000 genomes] |
| rs13247906 | 0.84[AMR][1000 genomes] |
| rs2159825 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs28403443 | 0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs28449483 | 0.84[AMR][1000 genomes] |
| rs28550991 | 0.84[AMR][1000 genomes] |
| rs28635203 | 0.84[AMR][1000 genomes] |
| rs34125908 | 0.84[AMR][1000 genomes] |
| rs36199141 | 0.95[EUR][1000 genomes] |
| rs4283984 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6466830 | 0.84[AMR][1000 genomes] |
| rs71574713 | 0.84[AMR][1000 genomes] |
| rs71574717 | 0.95[EUR][1000 genomes] |
| rs7779064 | 0.84[AMR][1000 genomes] |
| rs7789775 | 0.84[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532178 | chr7:122203056-122978846 | Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv532179 | chr7:122249639-122986259 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv532181 | chr7:122291571-122684719 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv817238 | chr7:122325864-122371594 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:122333000-122350400 | Weak transcription | Gastric | stomach |
| 2 | chr7:122336600-122359000 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
| 3 | chr7:122347400-122348800 | Weak transcription | HepG2 | liver |
