Variant report

Variant	rs35297838
Chromosome Location	chr1:220907887-220907888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:220904641..220907994-chr1:220920402..220922198,3	MCF-7	breast:
2	chr1:220905806..220908552-chr1:220910412..220912750,2	K562	blood:
3	chr1:220905522..220909256-chr1:220918149..220921942,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117791	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11118602	0.82[JPT][hapmap]
rs11118603	0.84[CHD][hapmap];0.82[JPT][hapmap]
rs12021979	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs12023067	0.82[JPT][hapmap]
rs12023149	0.91[ASN][1000 genomes]
rs12023249	0.82[JPT][hapmap]
rs12023303	0.82[JPT][hapmap]
rs12025460	0.94[ASN][1000 genomes]
rs12026135	0.82[JPT][hapmap]
rs12026813	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs12027068	0.82[JPT][hapmap]
rs12027298	1.00[JPT][hapmap]
rs12028887	0.82[JPT][hapmap]
rs12029901	0.82[JPT][hapmap]
rs12030190	0.82[JPT][hapmap]
rs12030249	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs12030434	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs12031217	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs12031479	0.82[JPT][hapmap]
rs12032336	0.82[JPT][hapmap]
rs12033644	0.82[JPT][hapmap]
rs12033732	0.82[JPT][hapmap]
rs12033808	0.82[JPT][hapmap]
rs12034388	1.00[ASW][hapmap]
rs12034895	0.94[ASN][1000 genomes]
rs12034995	0.82[JPT][hapmap]
rs12038224	0.86[CHD][hapmap]
rs12038621	0.83[ASN][1000 genomes]
rs12039043	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs12039064	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs12039091	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs12041923	1.00[JPT][hapmap]
rs12042585	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12043238	1.00[JPT][hapmap]
rs12043602	0.94[ASN][1000 genomes]
rs12044903	1.00[JPT][hapmap]
rs12045953	0.86[CHD][hapmap]
rs12046069	1.00[ASW][hapmap]
rs12046511	0.85[JPT][hapmap]
rs12048861	0.82[JPT][hapmap]
rs17008263	0.80[AMR][1000 genomes]
rs17008318	1.00[AFR][1000 genomes]
rs17008338	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17008680	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs17587507	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs182872	1.00[JPT][hapmap]
rs1874115	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs1874116	0.82[JPT][hapmap]
rs1874117	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs1874123	0.82[JPT][hapmap]
rs2067632	0.82[JPT][hapmap]
rs2067633	0.82[JPT][hapmap]
rs2270535	0.82[JPT][hapmap]
rs2275574	1.00[JPT][hapmap]
rs2642446	0.82[JPT][hapmap]
rs337140	1.00[JPT][hapmap]
rs371348	1.00[JPT][hapmap]
rs3767324	0.82[JPT][hapmap]
rs3795535	0.86[CHD][hapmap];1.00[JPT][hapmap]
rs3806325	1.00[LWK][hapmap]
rs3820350	1.00[JPT][hapmap]
rs3820353	1.00[JPT][hapmap]
rs419746	0.82[JPT][hapmap]
rs453079	1.00[JPT][hapmap]
rs6671579	0.82[JPT][hapmap]
rs6687366	0.82[JPT][hapmap]
rs6695882	1.00[AFR][1000 genomes]
rs72472366	0.94[ASN][1000 genomes]
rs746767	0.82[JPT][hapmap]
rs7545562	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs953970	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs9970393	1.00[JPT][hapmap]
rs9970394	0.86[CHD][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754270	chr1:220850116-220929155	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220905600-220908600	Enhancers	NHLF	lung
2	chr1:220905800-220908600	Enhancers	Placenta	Placenta
3	chr1:220906000-220908400	Enhancers	HMEC	breast
4	chr1:220906000-220908400	Enhancers	NHEK	skin
5	chr1:220906000-220908600	Enhancers	Fetal Intestine Large	intestine
6	chr1:220906000-220908600	Enhancers	NHDF-Ad	bronchial
7	chr1:220906200-220908400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:220906200-220908600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:220906400-220908000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:220906400-220908000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:220906400-220908000	Weak transcription	Pancreas	Pancrea
12	chr1:220906400-220908000	Weak transcription	HSMM	muscle
13	chr1:220906400-220908200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr1:220906400-220908600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:220906400-220908600	Enhancers	Fetal Intestine Small	intestine
16	chr1:220906400-220921000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr1:220906600-220908600	Enhancers	Stomach Mucosa	stomach
18	chr1:220906800-220908000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr1:220906800-220908000	Weak transcription	Small Intestine	intestine
20	chr1:220906800-220908200	Enhancers	Duodenum Mucosa	Duodenum
21	chr1:220906800-220908600	Flanking Active TSS	A549	lung
22	chr1:220907000-220908000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:220907000-220908000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr1:220907000-220908000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr1:220907000-220908000	Weak transcription	Ovary	ovary
26	chr1:220907000-220908000	Enhancers	Hela-S3	cervix
27	chr1:220907000-220908400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:220907000-220908400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr1:220907000-220908400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:220907000-220908400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:220907000-220908400	Enhancers	NH-A	brain
32	chr1:220907000-220908600	Enhancers	Osteobl	bone
33	chr1:220907200-220908200	Enhancers	Placenta Amnion	Placenta Amnion
34	chr1:220907200-220908400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr1:220907200-220908400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr1:220907200-220908600	Enhancers	HUVEC	blood vessel
37	chr1:220907400-220908000	Enhancers	Liver	Liver
38	chr1:220907400-220908200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr1:220907400-220908400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr1:220907600-220908000	Active TSS	Aorta	Aorta
41	chr1:220907800-220908200	Active TSS	HepG2	liver
42	chr1:220907800-220908400	Active TSS	Rectal Mucosa Donor 29	rectum

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