Variant report

Variant	rs35323141
Chromosome Location	chr2:181996558-181996559
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11688120	0.94[ASN][1000 genomes]
rs11692625	0.94[ASN][1000 genomes]
rs11891215	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11893772	0.98[ASN][1000 genomes]
rs11893821	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12999974	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13004683	0.88[ASN][1000 genomes]
rs13004750	0.90[ASN][1000 genomes]
rs13011738	0.94[ASN][1000 genomes]
rs13025711	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13026070	0.96[ASN][1000 genomes]
rs13031518	0.98[ASN][1000 genomes]
rs13033467	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34467063	0.94[ASN][1000 genomes]
rs34504038	0.94[ASN][1000 genomes]
rs34601234	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34714467	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34825850	0.98[ASN][1000 genomes]
rs35049898	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35076700	0.94[ASN][1000 genomes]
rs35482602	0.94[ASN][1000 genomes]
rs35543145	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35702511	0.94[ASN][1000 genomes]
rs35725888	0.98[ASN][1000 genomes]
rs55664819	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55900432	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55954384	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56169464	0.87[EUR][1000 genomes]
rs59395276	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59639779	0.92[ASN][1000 genomes]
rs62178846	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6433892	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6433895	0.87[EUR][1000 genomes]
rs6706397	0.86[EUR][1000 genomes]
rs6706696	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6710650	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6711938	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6743720	0.86[ASN][1000 genomes]
rs6746347	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6759865	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72887083	0.94[ASN][1000 genomes]
rs7349232	0.90[ASN][1000 genomes]
rs7558428	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7566146	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7566256	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7566434	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7569991	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7580796	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7581267	0.96[ASN][1000 genomes]
rs7592486	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7598960	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431824	chr2:181946115-182118559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv459954	chr2:181975252-182040293	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv583910	chr2:181975252-182040293	ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181995600-181996600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
2	chr2:181995600-181996600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
3	chr2:181995600-181996600	Enhancers	Dnd41	blood
4	chr2:181995600-181996800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr2:181996000-181996600	Flanking Active TSS	Primary T cells from cord blood	blood
6	chr2:181996000-181996600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
7	chr2:181996000-181996600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr2:181996000-181996600	Enhancers	Fetal Thymus	thymus
9	chr2:181996000-181996600	Enhancers	GM12878-XiMat	blood
10	chr2:181996200-181996600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
11	chr2:181996200-181996600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
12	chr2:181996200-181996600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
13	chr2:181996400-181996600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
14	chr2:181996400-181996600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
15	chr2:181996400-181996600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
16	chr2:181996400-181996600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr2:181996400-181996600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr2:181996400-181996600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood

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