Variant report

Variant	rs35329321
Chromosome Location	chr1:214730401-214730402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr1:214730230-214730487	HepG2	liver:	n/a	n/a
2	MAFK	chr1:214730311-214730502	IMR90	lung:	n/a	n/a
3	MAFF	chr1:214730286-214730473	HepG2	liver:	n/a	n/a
4	MAFK	chr1:214730214-214730423	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214730154..214732563-chr1:214752953..214754517,2	K562	blood:

Variant related genes	Relation type
PTPN14	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10494981	1.00[CHB][hapmap];0.85[TSI][hapmap]
rs17734395	1.00[CHB][hapmap]
rs17734456	1.00[CHB][hapmap]
rs17734758	1.00[CHB][hapmap]
rs17734879	1.00[CHB][hapmap]
rs17734993	1.00[CHB][hapmap]
rs17735632	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17735873	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17735908	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17791024	1.00[CHB][hapmap]
rs17792227	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17792294	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17792674	1.00[CEU][hapmap]
rs2362215	1.00[CEU][hapmap]
rs4077549	1.00[CHB][hapmap]
rs59110162	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60323172	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60569881	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540846	1.00[CHB][hapmap];0.85[TSI][hapmap]
rs6540847	1.00[CHB][hapmap]
rs6675792	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701105	1.00[CHB][hapmap]
rs6701315	1.00[CHB][hapmap]
rs73079780	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7550419	1.00[CHB][hapmap]
rs954414	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214726200-214730800	Weak transcription	HSMM	muscle
2	chr1:214726200-214731000	Weak transcription	NHEK	skin
3	chr1:214726200-214731200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:214726400-214730800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:214726400-214731200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:214726400-214731200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:214726400-214731200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr1:214726400-214731400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:214726800-214731000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr1:214726800-214731000	Weak transcription	NHLF	lung
11	chr1:214726800-214731200	Weak transcription	NHDF-Ad	bronchial
12	chr1:214727000-214731200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:214727000-214731200	Weak transcription	Hela-S3	cervix
14	chr1:214727000-214731200	Weak transcription	HMEC	breast
15	chr1:214727200-214730800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:214727200-214731000	Weak transcription	A549	lung
17	chr1:214727200-214731000	Weak transcription	NH-A	brain
18	chr1:214727200-214731000	Weak transcription	Osteobl	bone
19	chr1:214727200-214731200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:214727200-214731200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:214727200-214731400	Weak transcription	HUVEC	blood vessel
22	chr1:214727200-214732400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr1:214727200-214732600	Weak transcription	Fetal Kidney	kidney
24	chr1:214727400-214731200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr1:214727400-214731200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:214727400-214731200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr1:214727400-214731200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr1:214727600-214731200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr1:214727600-214731400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr1:214727800-214730800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr1:214729800-214731400	Weak transcription	GM12878-XiMat	blood
32	chr1:214730200-214731600	Weak transcription	Fetal Intestine Large	intestine
33	chr1:214730200-214733400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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