Variant report

Variant	rs35337480
Chromosome Location	chr7:104488467-104488468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104283185..104284990-chr7:104488377..104489969,20	MCF-7	breast:
2	chr7:103981713..103982644-chr7:104488433..104489374,3	MCF-7	breast:
3	chr7:104453530..104456071-chr7:104485897..104488742,2	K562	blood:
4	chr7:103847059..103849462-chr7:104487557..104490090,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164815	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10216243	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10226456	0.85[EUR][1000 genomes]
rs10226802	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10227564	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10235696	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10236552	0.85[EUR][1000 genomes]
rs10238498	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10243336	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10243529	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10247246	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10250365	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10257360	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10259925	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10262655	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10264318	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10272668	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10273609	0.80[ASN][1000 genomes]
rs10274240	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10280365	0.85[EUR][1000 genomes]
rs10281485	0.85[EUR][1000 genomes]
rs10953454	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10953455	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12535201	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12670275	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12705281	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12705282	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705285	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13233998	0.86[EUR][1000 genomes]
rs1468813	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17777379	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17777439	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2285533	0.85[EUR][1000 genomes]
rs28546781	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28587189	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34083033	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34171467	0.85[EUR][1000 genomes]
rs34439336	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34508498	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35146170	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35324592	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35756879	0.85[EUR][1000 genomes]
rs35894637	0.86[ASN][1000 genomes]
rs35988800	0.85[EUR][1000 genomes]
rs4351347	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6963979	0.85[ASN][1000 genomes]
rs6968540	0.83[ASN][1000 genomes]
rs71562620	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71562621	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71562626	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7781864	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5887	chr7:104401250-104491604	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104476400-104503000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:104479600-104488800	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:104481600-104514400	Weak transcription	Fetal Kidney	kidney
4	chr7:104483600-104493000	Weak transcription	Pancreas	Pancrea
5	chr7:104486000-104489400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:104486200-104489200	Enhancers	Brain Cingulate Gyrus	brain
7	chr7:104486200-104492800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:104486600-104492600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:104486800-104488600	Weak transcription	Brain Anterior Caudate	brain
10	chr7:104486800-104491000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:104487400-104488600	Weak transcription	Brain Hippocampus Middle	brain
12	chr7:104487400-104490000	Strong transcription	Fetal Intestine Small	intestine
13	chr7:104487800-104491400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:104488200-104488600	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr7:104488200-104488600	Enhancers	Brain Substantia Nigra	brain
16	chr7:104488200-104489000	Strong transcription	Fetal Intestine Large	intestine

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