Variant report

Variant	rs353603
Chromosome Location	chr11:35106468-35106469
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35104262..35106718-chr11:35159601..35161198,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000026508	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1097651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279845	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1477564	1.00[AMR][1000 genomes]
rs2553770	1.00[AMR][1000 genomes]
rs2732543	1.00[AMR][1000 genomes]
rs353593	0.97[AFR][1000 genomes]
rs353596	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs353609	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs353611	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs426400	1.00[AMR][1000 genomes]
rs587876	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430371	chr11:34975067-35111292	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv540999	chr11:35021936-35185471	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv541000	chr11:35053717-35185471	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv541001	chr11:35053717-35224624	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	esv2757437	chr11:35067482-35238578	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	esv2752912	chr11:35074167-35238578	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	nsv508623	chr11:35094933-35203363	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv541002	chr11:35101282-35224624	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv975326	chr11:35103908-35125981	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35097800-35106600	Enhancers	Fetal Thymus	thymus
2	chr11:35103200-35106600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:35103200-35106800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:35103200-35107800	Enhancers	Adipose Nuclei	Adipose
5	chr11:35103200-35110600	Enhancers	Fetal Muscle Leg	muscle
6	chr11:35103400-35106600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr11:35103600-35106800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:35103600-35108400	Enhancers	Fetal Muscle Trunk	muscle
9	chr11:35103800-35106600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr11:35103800-35106600	Enhancers	Primary hematopoietic stem cells	blood
11	chr11:35103800-35106600	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr11:35104000-35110400	Enhancers	Psoas Muscle	Psoas
13	chr11:35104200-35106600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:35104200-35106800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:35104400-35107800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:35104400-35108800	Weak transcription	HUVEC	blood vessel
17	chr11:35104600-35106800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr11:35104600-35110000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:35104800-35106600	Enhancers	HSMM	muscle
20	chr11:35104800-35106600	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr11:35104800-35106800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr11:35104800-35109200	Weak transcription	Aorta	Aorta
23	chr11:35104800-35109200	Weak transcription	Spleen	Spleen
24	chr11:35105000-35106600	Enhancers	NHLF	lung
25	chr11:35105000-35106800	Enhancers	HMEC	breast
26	chr11:35105000-35107800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:35105000-35111000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr11:35105200-35106800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:35105200-35106800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:35105200-35107800	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr11:35105200-35108000	Enhancers	NHDF-Ad	bronchial
32	chr11:35105200-35109200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:35105200-35109200	Weak transcription	Right Ventricle	heart
34	chr11:35105200-35109800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:35105200-35110000	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr11:35105400-35106600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:35105400-35106800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr11:35105400-35107600	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr11:35105400-35107800	Enhancers	NHEK	skin
40	chr11:35105400-35108000	Enhancers	Primary T cells fromperipheralblood	blood
41	chr11:35105400-35108000	Enhancers	Hela-S3	cervix
42	chr11:35105400-35109000	Weak transcription	Pancreas	Pancrea
43	chr11:35105400-35109200	Weak transcription	Lung	lung
44	chr11:35105400-35109400	Enhancers	Rectal Smooth Muscle	rectum
45	chr11:35105400-35111800	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr11:35105400-35112400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr11:35105400-35112800	Enhancers	Primary T cells from cord blood	blood
48	chr11:35105600-35106600	Weak transcription	Fetal Lung	lung
49	chr11:35105600-35109000	Weak transcription	Placenta	Placenta
50	chr11:35105600-35109200	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links