Variant report

Variant	rs35361731
Chromosome Location	chr2:183364723-183364724
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11883669	0.97[ASN][1000 genomes]
rs11884886	0.96[ASN][1000 genomes]
rs11892848	0.97[ASN][1000 genomes]
rs12616179	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12616229	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12622605	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12623018	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12996626	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13008937	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13036034	0.82[AMR][1000 genomes]
rs13400207	0.96[ASN][1000 genomes]
rs1430142	0.98[ASN][1000 genomes]
rs1430143	0.98[ASN][1000 genomes]
rs1430144	0.98[ASN][1000 genomes]
rs1430145	0.97[ASN][1000 genomes]
rs1430150	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17265350	0.82[AMR][1000 genomes]
rs1835339	0.92[ASN][1000 genomes]
rs2099185	0.96[ASN][1000 genomes]
rs2303890	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2368297	0.96[ASN][1000 genomes]
rs2368298	0.96[ASN][1000 genomes]
rs2368299	0.98[ASN][1000 genomes]
rs2887208	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2887217	0.96[ASN][1000 genomes]
rs34245807	0.85[AMR][1000 genomes]
rs35182213	0.96[ASN][1000 genomes]
rs4480955	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4629124	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4666587	0.96[ASN][1000 genomes]
rs4666846	0.96[ASN][1000 genomes]
rs4666851	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs55893866	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs55986741	0.97[ASN][1000 genomes]
rs67259847	0.94[ASN][1000 genomes]
rs6740244	0.98[ASN][1000 genomes]
rs6747821	0.96[ASN][1000 genomes]
rs6758298	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6760589	0.97[ASN][1000 genomes]
rs7563753	0.98[ASN][1000 genomes]
rs7578481	0.95[ASN][1000 genomes]
rs7578703	0.95[ASN][1000 genomes]
rs7592388	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183355000-183364800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:183361600-183392000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:183362200-183365800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr2:183364200-183364800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:183364200-183365600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:183364200-183366000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:183364200-183366000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:183364200-183366200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr2:183364400-183365400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:183364400-183365600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:183364400-183365600	Enhancers	Osteobl	bone
12	chr2:183364400-183365800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:183364400-183366000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr2:183364400-183366200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr2:183364400-183366400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr2:183364400-183366600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr2:183364400-183366800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr2:183364600-183364800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr2:183364600-183365000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr2:183364600-183365000	Enhancers	Brain Inferior Temporal Lobe	brain

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