Variant report

Variant	rs35368404
Chromosome Location	chr5:15928420-15928421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:15926786..15928687-chr5:15937563..15939757,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10058620	1.00[AMR][1000 genomes]
rs1354184	1.00[AMR][1000 genomes]
rs1394655	1.00[AMR][1000 genomes]
rs16867814	1.00[AMR][1000 genomes]
rs16867816	1.00[AMR][1000 genomes]
rs1875986	1.00[AMR][1000 genomes]
rs1875987	1.00[AMR][1000 genomes]
rs4360042	1.00[AMR][1000 genomes]
rs56705466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60482114	1.00[AMR][1000 genomes]
rs7720693	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv461986	chr5:15854098-15943683	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv597292	chr5:15854098-15943683	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv427712	chr5:15883439-16055856	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv4735	chr5:15916346-15961432	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15913800-15936000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr5:15914000-15940000	Weak transcription	Colon Smooth Muscle	Colon
3	chr5:15919600-15933600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:15920000-15933400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:15923200-15929200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:15925600-15929400	Weak transcription	NHLF	lung
7	chr5:15925600-15929800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:15925600-15929800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:15926000-15935600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr5:15926200-15929800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:15926600-15936600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr5:15926800-15939000	Weak transcription	HSMM	muscle
13	chr5:15927000-15932200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:15927000-15933000	Weak transcription	Brain Substantia Nigra	brain
15	chr5:15927000-15933600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr5:15927000-15937000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:15927000-15938800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr5:15927200-15933000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr5:15927200-15933400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr5:15927400-15929200	Weak transcription	Fetal Brain Female	brain
21	chr5:15927400-15933000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr5:15927400-15933400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr5:15927400-15933600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:15927600-15930600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr5:15927600-15931600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr5:15927600-15931600	Weak transcription	Brain Angular Gyrus	brain
27	chr5:15927600-15931600	Weak transcription	Brain Anterior Caudate	brain
28	chr5:15927600-15932200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr5:15927600-15932400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr5:15927600-15933000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr5:15927600-15936200	Weak transcription	Brain Hippocampus Middle	brain
32	chr5:15927600-15936800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr5:15928000-15928600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr5:15928000-15928600	Strong transcription	Fetal Lung	lung
35	chr5:15928000-15928600	Strong transcription	Dnd41	blood
36	chr5:15928000-15928800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr5:15928000-15928800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr5:15928000-15928800	Strong transcription	Aorta	Aorta
39	chr5:15928000-15928800	Genic enhancers	Ovary	ovary
40	chr5:15928000-15929000	Strong transcription	Fetal Muscle Trunk	muscle
41	chr5:15928000-15929000	Strong transcription	Fetal Stomach	stomach
42	chr5:15928000-15929400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr5:15928000-15929400	Strong transcription	Fetal Muscle Leg	muscle
44	chr5:15928000-15936400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr5:15928200-15928600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr5:15928200-15928600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr5:15928200-15928600	ZNF genes & repeats	Esophagus	oesophagus
48	chr5:15928200-15928600	ZNF genes & repeats	Fetal Intestine Large	intestine
49	chr5:15928200-15928600	ZNF genes & repeats	Spleen	Spleen
50	chr5:15928200-15928800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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