Variant report

Variant	rs35370116
Chromosome Location	chr19:42775056-42775057
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:42774007..42775893-chr19:42829806..42832465,2	K562	blood:
2	chr19:42773801..42775756-chr19:42804416..42807088,2	K562	blood:
3	chr12:120729494..120731830-chr19:42774117..42775700,2	MCF-7	breast:
4	chr19:42747132..42763787-chr19:42768368..42776785,67	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200795	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000268643	Chromatin interaction
ENSG00000188368	Chromatin interaction
ENSG00000105722	Chromatin interaction
ENSG00000105429	Chromatin interaction
ENSG00000079462	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv520239	chr19:42357455-42931004	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	esv1805469	chr19:42367635-42798851	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
4	nsv911782	chr19:42514712-42931004	Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
5	esv1794508	chr19:42580026-42791462	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
6	nsv1055554	chr19:42619671-42821642	Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
7	nsv833833	chr19:42657276-42783122	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
8	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
9	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
10	nsv833834	chr19:42736444-42835027	Genic enhancers Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	42 gene(s)	inside rSNPs	diseases
11	nsv911784	chr19:42741124-42787664	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	36 gene(s)	inside rSNPs	diseases
12	nsv911785	chr19:42741124-42917545	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
13	nsv911786	chr19:42744234-42797959	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	39 gene(s)	inside rSNPs	diseases
14	esv1802977	chr19:42754437-42789945	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases
15	esv1801251	chr19:42768288-42788467	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
16	esv1803455	chr19:42768288-42788467	Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
17	esv1803706	chr19:42768288-42788467	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
18	esv1801291	chr19:42772432-42788467	Flanking Active TSS Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
19	esv1801294	chr19:42772432-42788467	Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
20	esv1801914	chr19:42772432-42788467	Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
21	nsv911787	chr19:42773862-42795554	Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42771800-42775400	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr19:42772000-42775200	Active TSS	Psoas Muscle	Psoas
3	chr19:42772000-42775400	Active TSS	Aorta	Aorta
4	chr19:42772200-42775200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr19:42772200-42775200	Active TSS	Fetal Kidney	kidney
6	chr19:42773600-42775200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
7	chr19:42773600-42775200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
8	chr19:42773600-42775200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
9	chr19:42773600-42775400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
10	chr19:42773600-42775600	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr19:42773600-42775800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr19:42773600-42776000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr19:42773800-42775200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr19:42773800-42775200	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr19:42773800-42775200	Flanking Active TSS	Primary B cells from peripheral blood	blood
16	chr19:42773800-42775200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
17	chr19:42773800-42775200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
18	chr19:42773800-42775200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
19	chr19:42773800-42775200	Flanking Active TSS	Brain Germinal Matrix	brain
20	chr19:42773800-42775200	Flanking Active TSS	Fetal Brain Female	brain
21	chr19:42773800-42775200	Flanking Active TSS	Fetal Intestine Large	intestine
22	chr19:42773800-42775200	Flanking Active TSS	Fetal Thymus	thymus
23	chr19:42773800-42775200	Flanking Active TSS	A549	lung
24	chr19:42773800-42775200	Flanking Active TSS	Dnd41	blood
25	chr19:42773800-42775200	Flanking Active TSS	NH-A	brain
26	chr19:42773800-42775400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
27	chr19:42773800-42775400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr19:42773800-42775400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr19:42773800-42775400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr19:42773800-42775600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
31	chr19:42773800-42775600	Flanking Active TSS	Primary hematopoietic stem cells	blood
32	chr19:42773800-42775600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr19:42773800-42775600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr19:42773800-42775600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
35	chr19:42773800-42775600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr19:42773800-42775600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
37	chr19:42773800-42775600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr19:42773800-42775600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr19:42773800-42775600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr19:42773800-42775600	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr19:42773800-42775600	Flanking Active TSS	Brain Cingulate Gyrus	brain
42	chr19:42773800-42775600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
43	chr19:42773800-42775600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
44	chr19:42773800-42775600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
45	chr19:42773800-42775600	Flanking Active TSS	Rectal Smooth Muscle	rectum
46	chr19:42773800-42775600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
47	chr19:42773800-42775800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr19:42773800-42775800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr19:42774000-42775200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr19:42774000-42775200	Flanking Active TSS	Brain Angular Gyrus	brain

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