Variant report

Variant	rs35374072
Chromosome Location	chr6:150534987-150534988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11753008	0.91[EUR][1000 genomes]
rs11757696	0.91[EUR][1000 genomes]
rs1535148	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150526600-150541800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:150529600-150536000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:150530200-150541600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:150530600-150535200	Enhancers	K562	blood
5	chr6:150531000-150541800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:150531400-150535000	Weak transcription	Spleen	Spleen
7	chr6:150533000-150535600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:150533400-150541400	Weak transcription	Fetal Brain Female	brain
9	chr6:150534000-150551000	Weak transcription	Right Atrium	heart
10	chr6:150534200-150535800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:150534400-150535000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:150534400-150536000	Enhancers	Fetal Heart	heart
13	chr6:150534400-150538000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:150534600-150536000	Weak transcription	NHEK	skin
15	chr6:150534600-150536200	Weak transcription	HMEC	breast
16	chr6:150534600-150548600	Weak transcription	Left Ventricle	heart
17	chr6:150534800-150541800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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