Variant report

Variant	rs35374835
Chromosome Location	chr1:211380444-211380445
allele	GC/TT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:211380371-211380523	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr1:211380373-211380712	MCF-7	breast:	n/a	n/a
3	POLR2A	chr1:211380433-211380554	ProgFib	skin:	n/a	n/a
4	POLR2A	chr1:211380390-211380507	A549	lung:	n/a	n/a
5	POLR2A	chr1:211380395-211380469	HepG2	liver:	n/a	n/a
6	POLR2A	chr1:211380376-211380537	GM12878	blood:	n/a	n/a
7	POLR2A	chr1:211380430-211380609	MCF-7	breast:	n/a	n/a
8	POLR2A	chr1:211380376-211380467	HUVEC	blood vessel:	n/a	n/a
9	MYC	chr1:211380381-211380468	MCF-7	breast:	n/a	n/a
10	POLR2A	chr1:211380432-211380590	MCF-7	breast:	n/a	n/a
11	POLR2A	chr1:211380394-211380494	A549	lung:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:211380407-211380457	HCT-116	colon:	n/a
2	chr1:211380407-211380457	NT2-D1	testis:	n/a
3	chr1:211380407-211380457	GM12878	blood:	n/a
4	chr1:211380407-211380457	RPTEC	kidney:	n/a
5	chr1:211380407-211380457	GM06990	blood:	n/a
6	chr1:211380407-211380457	HRPEpiC	eye:	n/a
7	chr1:211380407-211380457	CMK	blood:	n/a
8	chr1:211380407-211380457	HAEpiC	amniotic membrane:	n/a
9	chr1:211380407-211380457	HEK293	kidney:	embryo
10	chr1:211380407-211380457	HL-60	blood:	n/a
11	chr1:211380407-211380457	HMEC	breast:	n/a
12	chr1:211380407-211380457	SK-N-MC	brain:	n/a
13	chr1:211380407-211380457	NHBE	bronchial:	n/a
14	chr1:211380407-211380457	SKMC	muscle:	n/a
15	chr1:211380407-211380457	HRCEpiC	kidney:	n/a
16	chr1:211380407-211380457	T-47D	breast:	n/a
17	chr1:211380407-211380457	IMR90	lung:	fetal
18	chr1:211380407-211380457	HCPEpiC	choroid plexus:	n/a
19	chr1:211380407-211380457	LNCaP	prostate:	n/a
20	chr1:211380407-211380457	H1-hESC	embryonic stem cell:	embryo
21	chr1:211380407-211380457	AG04450	lung:	fetal
22	chr1:211380407-211380457	SAEC	small airway:	n/a
23	chr1:211380407-211380457	AG09319	gingival:	n/a
24	chr1:211380407-211380457	NHDF-neo	bronchial:	n/a
25	chr1:211380407-211380457	AG09309	skin:	n/a
26	chr1:211380407-211380457	PFSK-1	brain:	n/a
27	chr1:211380407-211380457	ECC-1	luminal epithelium:	n/a
28	chr1:211380407-211380457	SK-N-SH_RA	brain:	n/a
29	chr1:211380407-211380457	HRE	kidney:	n/a
30	chr1:211380407-211380457	HepG2	liver:	n/a
31	chr1:211380407-211380457	HCM	heart:	n/a
32	chr1:211380407-211380457	BE2_C	brain:	n/a
33	chr1:211380407-211380457	HEEpiC	esophagus:	n/a
34	chr1:211380407-211380457	HPAEpiC	pulmonary alveolar:	n/a
35	chr1:211380407-211380457	AG10803	skin:	n/a
36	chr1:211380407-211380457	AG04449	skin:	fetal
37	chr1:211380407-211380457	BJ	skin:	n/a
38	chr1:211380407-211380457	MCF10A-Er-Src	breast:	n/a
39	chr1:211380407-211380457	K562	blood:	n/a
40	chr1:211380407-211380457	HNPCEpiC	eye:	n/a
41	chr1:211380407-211380457	HIPEpiC	eye:	n/a
42	chr1:211380407-211380457	NH-A	brain:	n/a
43	chr1:211380407-211380457	A549	lung:	n/a
44	chr1:211380407-211380457	HUVEC	blood vessel:	n/a
45	chr1:211380407-211380457	Hepatocyte	liver:	n/a
46	chr1:211380407-211380457	AoSMC	blood vessel:	n/a
47	chr1:211380407-211380457	Caco-2	colon:	n/a
48	chr1:211380407-211380457	GM12892	blood:	n/a
49	chr1:211380407-211380457	ovcar-3	ovarian:	n/a
50	chr1:211380407-211380457	PANC-1	pancreas:	n/a

No data

Variant related genes	Relation type
ENSG00000226986	TF binding region
ENSG00000226986	CpG island

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11119713	0.84[EUR][1000 genomes]
rs11803005	0.84[EUR][1000 genomes]
rs11806910	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12731366	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12756590	0.85[EUR][1000 genomes]
rs17267484	0.81[EUR][1000 genomes]
rs1890326	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34256746	0.80[EUR][1000 genomes]
rs34355723	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34813082	0.84[EUR][1000 genomes]
rs35228985	0.84[EUR][1000 genomes]
rs35995968	0.85[EUR][1000 genomes]
rs60096533	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66526219	0.84[EUR][1000 genomes]
rs6679980	0.80[EUR][1000 genomes]
rs6686281	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67437198	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71640006	0.80[EUR][1000 genomes]
rs7556054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806574	chr1:211369721-211383129	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1808906	chr1:211369721-211383129	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv945277	chr1:211377389-211382878	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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