Variant report

Variant	rs35378778
Chromosome Location	chr20:24613054-24613055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:24612466..24614630-chr20:24629800..24632618,2	MCF-7	breast:
2	chr20:24610820..24613195-chr8:23266116..23269029,2	MCF-7	breast:
3	chr20:24611712..24613428-chr20:24614096..24616788,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11087472	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11697115	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11697994	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11699136	0.89[EUR][1000 genomes]
rs11699265	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11699457	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11700002	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13044561	0.89[EUR][1000 genomes]
rs34414983	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35435987	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35952359	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4140547	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55644719	0.90[EUR][1000 genomes]
rs8126133	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8126153	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv912824	chr20:24612808-24639916	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24608400-24613200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr20:24608600-24615000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr20:24608800-24616800	Enhancers	Brain Hippocampus Middle	brain
4	chr20:24609200-24615200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr20:24610400-24613400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr20:24610400-24613800	Weak transcription	Brain Anterior Caudate	brain
7	chr20:24610400-24615600	Weak transcription	Right Atrium	heart
8	chr20:24610600-24613200	Weak transcription	Fetal Muscle Leg	muscle
9	chr20:24610600-24613800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr20:24610600-24613800	Weak transcription	Gastric	stomach
11	chr20:24610600-24613800	Weak transcription	Left Ventricle	heart
12	chr20:24610600-24613800	Weak transcription	Lung	lung
13	chr20:24610600-24615000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr20:24610600-24615600	Weak transcription	Right Ventricle	heart
15	chr20:24610800-24615600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr20:24610800-24615600	Weak transcription	Thymus	Thymus
17	chr20:24611000-24613800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr20:24611000-24615200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr20:24611000-24615400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr20:24611400-24614400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr20:24611400-24614400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr20:24611400-24615400	Weak transcription	Fetal Thymus	thymus
23	chr20:24611600-24613400	Weak transcription	Brain Substantia Nigra	brain
24	chr20:24612200-24613200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr20:24612600-24614600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr20:24612800-24613600	Weak transcription	Aorta	Aorta
27	chr20:24612800-24614800	Weak transcription	Brain Angular Gyrus	brain
28	chr20:24613000-24613200	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr20:24613000-24615200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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