Variant report

Variant	rs35385
Chromosome Location	chr5:59807181-59807182
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11741754	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs11955398	0.81[CEU][hapmap]
rs12517174	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs12517207	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs1379116	0.81[CEU][hapmap];0.85[JPT][hapmap];0.85[YRI][hapmap]
rs17387940	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs26949	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs26950	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs40512	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1018614	chr5:59708223-59910308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv881711	chr5:59724947-59890278	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv598297	chr5:59734004-59862453	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59801400-59813800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:59801800-59813000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:59802400-59812400	Weak transcription	Primary B cells from cord blood	blood
4	chr5:59803600-59807200	Enhancers	Rectal Smooth Muscle	rectum
5	chr5:59804200-59815800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr5:59805800-59807200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:59806600-59814000	Weak transcription	Colon Smooth Muscle	Colon
8	chr5:59806800-59810000	Weak transcription	GM12878-XiMat	blood
9	chr5:59806800-59813800	Weak transcription	Left Ventricle	heart
10	chr5:59806800-59816000	Weak transcription	Fetal Muscle Leg	muscle
11	chr5:59807000-59811800	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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