Variant report

Variant	rs35390637
Chromosome Location	chr6:164226320-164226321
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:164221307..164222998-chr6:164224759..164227709,3	K562	blood:
2	chr6:164225076..164227653-chr6:164229597..164231889,2	K562	blood:
3	chr6:164221458..164224410-chr6:164224950..164227898,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10484518	0.93[ASN][1000 genomes]
rs13194833	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13207179	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1475208	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555228	0.95[ASN][1000 genomes]
rs16895346	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16895356	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2207443	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34732286	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34811073	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34839002	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35545234	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3967298	0.93[ASN][1000 genomes]
rs4709015	0.95[ASN][1000 genomes]
rs4709018	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709758	0.95[ASN][1000 genomes]
rs4709759	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60028618	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66758520	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6908861	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6910184	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6911532	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6911882	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6922730	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923240	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6927723	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6929655	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73019178	0.82[ASN][1000 genomes]
rs7341259	0.95[ASN][1000 genomes]
rs7741725	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742329	0.95[ASN][1000 genomes]
rs7742572	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749407	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7756548	0.82[ASN][1000 genomes]
rs7765450	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772777	0.93[ASN][1000 genomes]
rs9365609	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9365610	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv970710	chr6:164226049-164239768	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164226200-164226400	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links