Variant report

Variant	rs35406989
Chromosome Location	chr3:115999646-115999647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11918762	0.91[ASN][1000 genomes]
rs13073491	0.89[ASN][1000 genomes]
rs1563938	0.89[ASN][1000 genomes]
rs34840522	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35300468	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35910525	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55893774	0.87[ASN][1000 genomes]
rs6438312	0.91[ASN][1000 genomes]
rs6775293	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6809953	0.89[ASN][1000 genomes]
rs71323438	0.94[AFR][1000 genomes]
rs7639095	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7639424	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv3957	chr3:115986950-116032625	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115987400-116006200	Weak transcription	Brain Angular Gyrus	brain
2	chr3:115997200-116017200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:115998200-116006000	Weak transcription	Brain Germinal Matrix	brain
4	chr3:115999000-115999800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:115999000-115999800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:115999000-115999800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr3:115999000-116000000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:115999000-116000200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:115999000-116000400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:115999000-116000800	Enhancers	Fetal Brain Male	brain
11	chr3:115999200-115999800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:115999200-115999800	Flanking Active TSS	Brain Anterior Caudate	brain
13	chr3:115999200-115999800	Active TSS	Brain Substantia Nigra	brain
14	chr3:115999400-115999800	Flanking Active TSS	Colon Smooth Muscle	Colon
15	chr3:115999400-116000200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr3:115999400-116014000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:115999600-115999800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:115999600-115999800	Flanking Active TSS	Brain Cingulate Gyrus	brain
19	chr3:115999600-116000000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr3:115999600-116000200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr3:115999600-116000200	Weak transcription	Fetal Brain Female	brain
22	chr3:115999600-116000400	Enhancers	Rectal Smooth Muscle	rectum
23	chr3:115999600-116001400	Enhancers	Brain Hippocampus Middle	brain
24	chr3:115999600-116003800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr3:115999600-116004000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr3:115999600-116004600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr3:115999600-116006200	Weak transcription	Fetal Lung	lung

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