Variant report

Variant	rs35413274
Chromosome Location	chr7:137454446-137454447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 151 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:146)

rs_ID	r²[population]
rs12147674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12878124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12878633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12878710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12878846	1.00[AFR][1000 genomes]
rs12879149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12879319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12882123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12882687	1.00[AFR][1000 genomes]
rs12882773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12887471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12887601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12887758	1.00[AFR][1000 genomes]
rs12888451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12889687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12889859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12890074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12890845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12891108	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12893402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12894394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12896790	1.00[AFR][1000 genomes]
rs12897309	1.00[AFR][1000 genomes]
rs17179274	1.00[AFR][1000 genomes]
rs17179609	1.00[AFR][1000 genomes]
rs17768440	1.00[AFR][1000 genomes]
rs17768654	1.00[AFR][1000 genomes]
rs177874	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs177879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs177880	1.00[EUR][1000 genomes]
rs177881	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs177883	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs177884	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs177889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs177900	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1957587	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs33984772	1.00[AFR][1000 genomes]
rs34025516	1.00[AFR][1000 genomes]
rs34030694	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34043056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34069628	1.00[AFR][1000 genomes]
rs34184341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34242177	1.00[AFR][1000 genomes]
rs34256053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34265999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34273412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34304321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34306117	1.00[AFR][1000 genomes]
rs34338696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34434018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34450997	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34469876	1.00[AFR][1000 genomes]
rs34472406	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34477874	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34496783	1.00[AFR][1000 genomes]
rs34516219	1.00[AFR][1000 genomes]
rs34543736	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34548330	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34565474	0.83[EUR][1000 genomes]
rs34567961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34586390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34680819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34740378	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34747911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34813864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34830744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34886614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35030337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35074434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35082276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35110244	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35111962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35141852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35169093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35190835	1.00[AFR][1000 genomes]
rs35294705	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35310265	1.00[AFR][1000 genomes]
rs35319231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35330350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35333548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35347282	1.00[AFR][1000 genomes]
rs35350493	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35383091	1.00[AFR][1000 genomes]
rs35393462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35421306	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35427651	1.00[AFR][1000 genomes]
rs35435404	1.00[AFR][1000 genomes]
rs35438963	1.00[AFR][1000 genomes]
rs35441075	1.00[AFR][1000 genomes]
rs35454200	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35470726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35505269	1.00[AFR][1000 genomes]
rs35536208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35610918	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35692567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35699962	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35706871	1.00[AFR][1000 genomes]
rs35748911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35791659	1.00[AFR][1000 genomes]
rs35802121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35852338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35891950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35926829	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35926928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35942161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36004540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36044547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36074427	1.00[AFR][1000 genomes]
rs36189403	1.00[AFR][1000 genomes]
rs36194865	1.00[AFR][1000 genomes]
rs4294721	0.88[EUR][1000 genomes]
rs4901143	0.97[EUR][1000 genomes]
rs55734217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55972477	1.00[AFR][1000 genomes]
rs56223359	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56271359	0.90[EUR][1000 genomes]
rs71405800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71407703	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71407705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71407707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71407708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71407709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71407710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71407711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71407712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71407716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71407717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71407718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71407719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71407720	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71407721	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71407722	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71407723	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71407724	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71407725	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs71407726	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71407727	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs71407728	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71407729	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71407730	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71407731	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71407732	1.00[AFR][1000 genomes]
rs71407733	1.00[AFR][1000 genomes]
rs71407734	1.00[AFR][1000 genomes]
rs71407741	1.00[AFR][1000 genomes]
rs8017711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1794849	chr7:137453147-137456707	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
3	nsv511992	chr7:137453319-137457163	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
4	esv2428797	chr7:137454120-137455742	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv3338015	chr7:137454237-137456785	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137441000-137464400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:137442600-137456200	Weak transcription	HSMM	muscle
3	chr7:137451800-137456000	Weak transcription	HSMMtube	muscle
4	chr7:137451800-137456200	Weak transcription	Osteobl	bone
5	chr7:137452000-137455800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:137453400-137456400	Weak transcription	Brain Anterior Caudate	brain
7	chr7:137453400-137459000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr7:137453600-137456000	Weak transcription	NH-A	brain
9	chr7:137453600-137456400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:137453600-137456600	Weak transcription	NHLF	lung
11	chr7:137453600-137457400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:137453600-137457600	Weak transcription	Brain Angular Gyrus	brain
13	chr7:137453800-137455800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:137453800-137456000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:137453800-137456000	Weak transcription	Adipose Nuclei	Adipose
16	chr7:137453800-137456200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:137453800-137457000	Weak transcription	HMEC	breast
18	chr7:137453800-137457400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:137454000-137455800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr7:137454000-137456000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:137454000-137456400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:137454000-137456400	Weak transcription	NHEK	skin
23	chr7:137454000-137456600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:137454000-137457600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr7:137454000-137457600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr7:137454000-137459200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr7:137454000-137459200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr7:137454000-137459200	Weak transcription	Aorta	Aorta
29	chr7:137454000-137459400	Weak transcription	Esophagus	oesophagus
30	chr7:137454200-137455800	Weak transcription	NHDF-Ad	bronchial

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