Variant report

Variant	rs35422160
Chromosome Location	chr2:37780292-37780293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37779367..37783955-chr2:37786259..37791654,6	K562	blood:
2	chr2:37776380..37779203-chr2:37779985..37783372,3	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10168778	0.83[EUR][1000 genomes]
rs10176881	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10181174	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10184801	0.84[EUR][1000 genomes]
rs10197948	0.84[EUR][1000 genomes]
rs10208172	0.84[EUR][1000 genomes]
rs11124590	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11124592	0.85[EUR][1000 genomes]
rs11687796	0.84[EUR][1000 genomes]
rs11887848	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11888402	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11895388	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12612951	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12615363	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13002383	0.92[ASN][1000 genomes]
rs13432740	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34369565	0.89[ASN][1000 genomes]
rs34752978	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35574342	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35617918	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35745581	0.91[ASN][1000 genomes]
rs35990829	0.89[ASN][1000 genomes]
rs4233923	0.91[ASN][1000 genomes]
rs4404250	0.90[ASN][1000 genomes]
rs4670208	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4670730	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6544093	0.84[EUR][1000 genomes]
rs6710371	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6712065	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6730320	0.84[EUR][1000 genomes]
rs6733496	0.84[EUR][1000 genomes]
rs67348553	0.89[ASN][1000 genomes]
rs6747152	0.84[EUR][1000 genomes]
rs72795708	0.89[ASN][1000 genomes]
rs7557304	0.84[EUR][1000 genomes]
rs7560890	0.84[EUR][1000 genomes]
rs7564992	0.83[EUR][1000 genomes]
rs7587009	0.84[EUR][1000 genomes]
rs765372	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37774000-37781200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:37774200-37782600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr2:37777600-37781000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr2:37777800-37781200	Weak transcription	Fetal Thymus	thymus
5	chr2:37777800-37782200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr2:37777800-37782200	Weak transcription	Thymus	Thymus
7	chr2:37778200-37781400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr2:37778200-37781800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr2:37778200-37782000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr2:37779000-37780400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr2:37779000-37780400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:37779000-37780400	Enhancers	NHEK	skin
13	chr2:37779200-37780400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:37779400-37781200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:37779400-37787400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr2:37779400-37787800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr2:37779600-37782200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr2:37779600-37782600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr2:37779800-37780400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:37779800-37783600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr2:37780000-37780400	Enhancers	NHDF-Ad	bronchial
22	chr2:37780000-37781000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr2:37780000-37781000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr2:37780000-37782400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr2:37780000-37782400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr2:37780000-37783000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr2:37780000-37783400	Enhancers	Primary hematopoietic stem cells	blood
28	chr2:37780200-37781400	Weak transcription	GM12878-XiMat	blood
29	chr2:37780200-37787400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr2:37780200-37787600	Weak transcription	HMEC	breast

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